miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18327 5' -57.8 NC_004681.1 + 29033 0.66 0.673932
Target:  5'- gGGGGagCGCcUCAGUCgGCGaguaCACCUc -3'
miRNA:   3'- gCCCCagGUGaAGUCAGgUGC----GUGGA- -5'
18327 5' -57.8 NC_004681.1 + 56314 0.66 0.663416
Target:  5'- -cGGGUCgACgcCGGUCCAgGcCACCg -3'
miRNA:   3'- gcCCCAGgUGaaGUCAGGUgC-GUGGa -5'
18327 5' -57.8 NC_004681.1 + 37569 0.66 0.662363
Target:  5'- cCGGGGUCgaGCUguggugaUCGG-CCACGUACg- -3'
miRNA:   3'- -GCCCCAGg-UGA-------AGUCaGGUGCGUGga -5'
18327 5' -57.8 NC_004681.1 + 73108 0.67 0.589555
Target:  5'- cCGGGGcgUACUgcgCAGagCACGCGCCa -3'
miRNA:   3'- -GCCCCagGUGAa--GUCagGUGCGUGGa -5'
18327 5' -57.8 NC_004681.1 + 65154 0.67 0.586406
Target:  5'- cCGGuGUCCgcGCUUCGGUCUACuacgacgccgccaaGCGCCa -3'
miRNA:   3'- -GCCcCAGG--UGAAGUCAGGUG--------------CGUGGa -5'
18327 5' -57.8 NC_004681.1 + 34688 0.68 0.568627
Target:  5'- uCGGGGUCuCGCUUCGGcgCCuucgguGCGgGCUUg -3'
miRNA:   3'- -GCCCCAG-GUGAAGUCa-GG------UGCgUGGA- -5'
18327 5' -57.8 NC_004681.1 + 30265 0.68 0.568627
Target:  5'- uGGcguaGGUCCACUccgCGG-CCGCGcCGCCUg -3'
miRNA:   3'- gCC----CCAGGUGAa--GUCaGGUGC-GUGGA- -5'
18327 5' -57.8 NC_004681.1 + 1325 0.68 0.558231
Target:  5'- uGGGGaUCgGCUcgucgCGGUUCAUGUACCg -3'
miRNA:   3'- gCCCC-AGgUGAa----GUCAGGUGCGUGGa -5'
18327 5' -57.8 NC_004681.1 + 25264 0.68 0.537609
Target:  5'- cCGGGG-CCACUgaauaccuUCuGGUCCGCGCcaGCUa -3'
miRNA:   3'- -GCCCCaGGUGA--------AG-UCAGGUGCG--UGGa -5'
18327 5' -57.8 NC_004681.1 + 2330 0.69 0.497217
Target:  5'- uCGGcGcCCACUUCugcGUgCCGCGCGCCa -3'
miRNA:   3'- -GCCcCaGGUGAAGu--CA-GGUGCGUGGa -5'
18327 5' -57.8 NC_004681.1 + 54010 0.69 0.487329
Target:  5'- gGGGGUCUcgcauugcugGCUUCcacgagGGUCCgccGCGCGCCc -3'
miRNA:   3'- gCCCCAGG----------UGAAG------UCAGG---UGCGUGGa -5'
18327 5' -57.8 NC_004681.1 + 43788 0.7 0.448758
Target:  5'- aGGGGauuugccuccuUCCACga-GGUCCGCGC-CCa -3'
miRNA:   3'- gCCCC-----------AGGUGaagUCAGGUGCGuGGa -5'
18327 5' -57.8 NC_004681.1 + 56969 1.08 0.00101
Target:  5'- cCGGGGUCCACUUCAGUCCACGCACCUg -3'
miRNA:   3'- -GCCCCAGGUGAAGUCAGGUGCGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.