miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18329 5' -50 NC_004681.1 + 29326 0.66 0.985416
Target:  5'- ------gGCCCcUCGGAUUu-CGAGGg -3'
miRNA:   3'- gcuuaagCGGGuAGCCUAGuuGCUCC- -5'
18329 5' -50 NC_004681.1 + 58362 0.66 0.983485
Target:  5'- uGAcgUCGCUCGUCu--UCggUGAGGc -3'
miRNA:   3'- gCUuaAGCGGGUAGccuAGuuGCUCC- -5'
18329 5' -50 NC_004681.1 + 32868 0.66 0.983282
Target:  5'- aCGAGcg-GCCCAgCGGAUUgccgaccgggccgAACGAGGc -3'
miRNA:   3'- -GCUUaagCGGGUaGCCUAG-------------UUGCUCC- -5'
18329 5' -50 NC_004681.1 + 35482 0.66 0.97905
Target:  5'- gGAAUcCGgCCAccgguggcUUGGAcgCAGCGAGGa -3'
miRNA:   3'- gCUUAaGCgGGU--------AGCCUa-GUUGCUCC- -5'
18329 5' -50 NC_004681.1 + 15855 0.66 0.976526
Target:  5'- aGGucUCGCCCAUCuGGAUgccCAAgGAGu -3'
miRNA:   3'- gCUuaAGCGGGUAG-CCUA---GUUgCUCc -5'
18329 5' -50 NC_004681.1 + 6985 0.66 0.976526
Target:  5'- aCGAAgcagGCCCAggauguUCGGAcccUCGuggACGAGGg -3'
miRNA:   3'- -GCUUaag-CGGGU------AGCCU---AGU---UGCUCC- -5'
18329 5' -50 NC_004681.1 + 75161 0.66 0.976526
Target:  5'- cCGGuaUCGCCUAcCGGGUCGAgGAc- -3'
miRNA:   3'- -GCUuaAGCGGGUaGCCUAGUUgCUcc -5'
18329 5' -50 NC_004681.1 + 8590 0.66 0.976526
Target:  5'- gCGAAggCGCCCAUCaGcUCAGCcgcagccgugccGGGGu -3'
miRNA:   3'- -GCUUaaGCGGGUAGcCuAGUUG------------CUCC- -5'
18329 5' -50 NC_004681.1 + 1341 0.66 0.976526
Target:  5'- aCGAGUUC-CCCAUCgguggGGAUCGGCu--- -3'
miRNA:   3'- -GCUUAAGcGGGUAG-----CCUAGUUGcucc -5'
18329 5' -50 NC_004681.1 + 8762 0.67 0.973787
Target:  5'- aGAGUUCGCg---CGGGUCuACGAGc -3'
miRNA:   3'- gCUUAAGCGgguaGCCUAGuUGCUCc -5'
18329 5' -50 NC_004681.1 + 27537 0.67 0.967626
Target:  5'- uGGGcUCGCCCAU--GAUCAugcCGAGGu -3'
miRNA:   3'- gCUUaAGCGGGUAgcCUAGUu--GCUCC- -5'
18329 5' -50 NC_004681.1 + 58445 0.67 0.964188
Target:  5'- aGAccggCGCCCAcgucaagUGGAUCAACGAa- -3'
miRNA:   3'- gCUuaa-GCGGGUa------GCCUAGUUGCUcc -5'
18329 5' -50 NC_004681.1 + 43725 0.67 0.964188
Target:  5'- uCGAcucagCGUCCcUCGGggCAAgGAGGg -3'
miRNA:   3'- -GCUuaa--GCGGGuAGCCuaGUUgCUCC- -5'
18329 5' -50 NC_004681.1 + 53882 0.67 0.960503
Target:  5'- gGAAUcUGCCCAUUGuGUCGACGGcgcGGu -3'
miRNA:   3'- gCUUAaGCGGGUAGCcUAGUUGCU---CC- -5'
18329 5' -50 NC_004681.1 + 23844 0.68 0.956564
Target:  5'- -aGAUUCaGCCCAgcuGGAUCAGCGGc- -3'
miRNA:   3'- gcUUAAG-CGGGUag-CCUAGUUGCUcc -5'
18329 5' -50 NC_004681.1 + 18041 0.68 0.93817
Target:  5'- cCGGAgcCGCCC-UCGGcacUCAccuGCGGGGa -3'
miRNA:   3'- -GCUUaaGCGGGuAGCCu--AGU---UGCUCC- -5'
18329 5' -50 NC_004681.1 + 41086 0.69 0.932894
Target:  5'- uGAGgaCGUCCAcaaGGAgcUCGGCGAGGu -3'
miRNA:   3'- gCUUaaGCGGGUag-CCU--AGUUGCUCC- -5'
18329 5' -50 NC_004681.1 + 48339 0.69 0.909041
Target:  5'- -----gUGCCCGuaUCGGAcuggcgagccUCGGCGAGGg -3'
miRNA:   3'- gcuuaaGCGGGU--AGCCU----------AGUUGCUCC- -5'
18329 5' -50 NC_004681.1 + 50548 0.69 0.909041
Target:  5'- gGGcgUCGCCCAcgacgUGGua-GACGAGGu -3'
miRNA:   3'- gCUuaAGCGGGUa----GCCuagUUGCUCC- -5'
18329 5' -50 NC_004681.1 + 56343 0.7 0.885353
Target:  5'- uCGAAggugUCGCCCucuugcagcucgcUCGGGUCGACGccGGu -3'
miRNA:   3'- -GCUUa---AGCGGGu------------AGCCUAGUUGCu-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.