Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18329 | 5' | -50 | NC_004681.1 | + | 56343 | 0.7 | 0.885353 |
Target: 5'- uCGAAggugUCGCCCucuugcagcucgcUCGGGUCGACGccGGu -3' miRNA: 3'- -GCUUa---AGCGGGu------------AGCCUAGUUGCu-CC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 58362 | 0.66 | 0.983485 |
Target: 5'- uGAcgUCGCUCGUCu--UCggUGAGGc -3' miRNA: 3'- gCUuaAGCGGGUAGccuAGuuGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 58445 | 0.67 | 0.964188 |
Target: 5'- aGAccggCGCCCAcgucaagUGGAUCAACGAa- -3' miRNA: 3'- gCUuaa-GCGGGUa------GCCUAGUUGCUcc -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 58723 | 0.72 | 0.78386 |
Target: 5'- gCGAAUUCGaCCCGggCGaGAUCGuUGAGGu -3' miRNA: 3'- -GCUUAAGC-GGGUa-GC-CUAGUuGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 58807 | 1.12 | 0.004015 |
Target: 5'- uCGAAUUCGCCCAUCGGAUCAACGAGGa -3' miRNA: 3'- -GCUUAAGCGGGUAGCCUAGUUGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 65998 | 0.74 | 0.689895 |
Target: 5'- gCGG--UCGCCCA--GGAUCAugcGCGAGGa -3' miRNA: 3'- -GCUuaAGCGGGUagCCUAGU---UGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 75161 | 0.66 | 0.976526 |
Target: 5'- cCGGuaUCGCCUAcCGGGUCGAgGAc- -3' miRNA: 3'- -GCUuaAGCGGGUaGCCUAGUUgCUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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