Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18329 | 5' | -50 | NC_004681.1 | + | 8590 | 0.66 | 0.976526 |
Target: 5'- gCGAAggCGCCCAUCaGcUCAGCcgcagccgugccGGGGu -3' miRNA: 3'- -GCUUaaGCGGGUAGcCuAGUUG------------CUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 56343 | 0.7 | 0.885353 |
Target: 5'- uCGAAggugUCGCCCucuugcagcucgcUCGGGUCGACGccGGu -3' miRNA: 3'- -GCUUa---AGCGGGu------------AGCCUAGUUGCu-CC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 50548 | 0.69 | 0.909041 |
Target: 5'- gGGcgUCGCCCAcgacgUGGua-GACGAGGu -3' miRNA: 3'- gCUuaAGCGGGUa----GCCuagUUGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 48339 | 0.69 | 0.909041 |
Target: 5'- -----gUGCCCGuaUCGGAcuggcgagccUCGGCGAGGg -3' miRNA: 3'- gcuuaaGCGGGU--AGCCU----------AGUUGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 41086 | 0.69 | 0.932894 |
Target: 5'- uGAGgaCGUCCAcaaGGAgcUCGGCGAGGu -3' miRNA: 3'- gCUUaaGCGGGUag-CCU--AGUUGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 18041 | 0.68 | 0.93817 |
Target: 5'- cCGGAgcCGCCC-UCGGcacUCAccuGCGGGGa -3' miRNA: 3'- -GCUUaaGCGGGuAGCCu--AGU---UGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 53882 | 0.67 | 0.960503 |
Target: 5'- gGAAUcUGCCCAUUGuGUCGACGGcgcGGu -3' miRNA: 3'- gCUUAaGCGGGUAGCcUAGUUGCU---CC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 43725 | 0.67 | 0.964188 |
Target: 5'- uCGAcucagCGUCCcUCGGggCAAgGAGGg -3' miRNA: 3'- -GCUuaa--GCGGGuAGCCuaGUUgCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 27537 | 0.67 | 0.967626 |
Target: 5'- uGGGcUCGCCCAU--GAUCAugcCGAGGu -3' miRNA: 3'- gCUUaAGCGGGUAgcCUAGUu--GCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 44471 | 0.71 | 0.86522 |
Target: 5'- cCGGAcgggCGCCCGUaGGGUCAGgucuCGGGGa -3' miRNA: 3'- -GCUUaa--GCGGGUAgCCUAGUU----GCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 50260 | 0.72 | 0.801391 |
Target: 5'- gGAcgUCGCUCAUuugccgacuuggaCGGAgaugccgccgucgUCAGCGAGGg -3' miRNA: 3'- gCUuaAGCGGGUA-------------GCCU-------------AGUUGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 65998 | 0.74 | 0.689895 |
Target: 5'- gCGG--UCGCCCA--GGAUCAugcGCGAGGa -3' miRNA: 3'- -GCUuaAGCGGGUagCCUAGU---UGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 1341 | 0.66 | 0.976526 |
Target: 5'- aCGAGUUC-CCCAUCgguggGGAUCGGCu--- -3' miRNA: 3'- -GCUUAAGcGGGUAG-----CCUAGUUGcucc -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 58362 | 0.66 | 0.983485 |
Target: 5'- uGAcgUCGCUCGUCu--UCggUGAGGc -3' miRNA: 3'- gCUuaAGCGGGUAGccuAGuuGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 35482 | 0.66 | 0.97905 |
Target: 5'- gGAAUcCGgCCAccgguggcUUGGAcgCAGCGAGGa -3' miRNA: 3'- gCUUAaGCgGGU--------AGCCUa-GUUGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 32868 | 0.66 | 0.983282 |
Target: 5'- aCGAGcg-GCCCAgCGGAUUgccgaccgggccgAACGAGGc -3' miRNA: 3'- -GCUUaagCGGGUaGCCUAG-------------UUGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 29326 | 0.66 | 0.985416 |
Target: 5'- ------gGCCCcUCGGAUUu-CGAGGg -3' miRNA: 3'- gcuuaagCGGGuAGCCUAGuuGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 58807 | 1.12 | 0.004015 |
Target: 5'- uCGAAUUCGCCCAUCGGAUCAACGAGGa -3' miRNA: 3'- -GCUUAAGCGGGUAGCCUAGUUGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 9471 | 0.8 | 0.407163 |
Target: 5'- aGGAUggUGCCCAgcgGGAUCAGCGGGGu -3' miRNA: 3'- gCUUAa-GCGGGUag-CCUAGUUGCUCC- -5' |
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18329 | 5' | -50 | NC_004681.1 | + | 15855 | 0.66 | 0.976526 |
Target: 5'- aGGucUCGCCCAUCuGGAUgccCAAgGAGu -3' miRNA: 3'- gCUuaAGCGGGUAG-CCUA---GUUgCUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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