Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18331 | 3' | -53.1 | NC_004681.1 | + | 61056 | 1.1 | 0.002123 |
Target: 5'- uGCACCGGAACUUCUCCAAGAGGCACGc -3' miRNA: 3'- -CGUGGCCUUGAAGAGGUUCUCCGUGC- -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 39331 | 0.79 | 0.265146 |
Target: 5'- cGCGCUGGAcACggCUCCGAGGGGC-CGc -3' miRNA: 3'- -CGUGGCCU-UGaaGAGGUUCUCCGuGC- -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 65481 | 0.74 | 0.445343 |
Target: 5'- gGCACCGGAucgggauACUUCUCgAGGAGG-GCu -3' miRNA: 3'- -CGUGGCCU-------UGAAGAGgUUCUCCgUGc -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 10333 | 0.74 | 0.465934 |
Target: 5'- --cCCGGAACUcuuggUCUCCAAGcAGGUugGc -3' miRNA: 3'- cguGGCCUUGA-----AGAGGUUC-UCCGugC- -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 66146 | 0.74 | 0.496177 |
Target: 5'- gGUACggcaGGuGCUUCUCgAAGAGGCGCu -3' miRNA: 3'- -CGUGg---CCuUGAAGAGgUUCUCCGUGc -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 13888 | 0.73 | 0.548407 |
Target: 5'- aGCGCCGGGACgacagCUuGGGGGCGCc -3' miRNA: 3'- -CGUGGCCUUGaaga-GGuUCUCCGUGc -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 68537 | 0.71 | 0.645788 |
Target: 5'- -uGCCGGuGgUUCUCCccGAGGGGCAgGa -3' miRNA: 3'- cgUGGCCuUgAAGAGG--UUCUCCGUgC- -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 4090 | 0.7 | 0.689143 |
Target: 5'- cGCGCUGGGucGCUUcCUCUcguGGGAGGCAa- -3' miRNA: 3'- -CGUGGCCU--UGAA-GAGG---UUCUCCGUgc -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 17596 | 0.7 | 0.699874 |
Target: 5'- aGCcaacCCGGAAg-UCUCCGAGgccgcccaugccAGGCACGa -3' miRNA: 3'- -CGu---GGCCUUgaAGAGGUUC------------UCCGUGC- -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 24571 | 0.7 | 0.71054 |
Target: 5'- aGCGCUGGAAC-UCUCCc---GGCGCc -3' miRNA: 3'- -CGUGGCCUUGaAGAGGuucuCCGUGc -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 8735 | 0.69 | 0.751315 |
Target: 5'- -aGCCGGGACcuacccgUUCUCCAgcgaAGAGuucGCGCGg -3' miRNA: 3'- cgUGGCCUUG-------AAGAGGU----UCUC---CGUGC- -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 37294 | 0.69 | 0.75234 |
Target: 5'- uGCGCCGGGucagCUCCAGGAugGGCuuGc -3' miRNA: 3'- -CGUGGCCUugaaGAGGUUCU--CCGugC- -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 5642 | 0.68 | 0.792219 |
Target: 5'- uGCAUCGGcaucAGCUUCUC--GGGGGUACc -3' miRNA: 3'- -CGUGGCC----UUGAAGAGguUCUCCGUGc -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 29812 | 0.68 | 0.792219 |
Target: 5'- gGCGCgGGAGCUcggcaUCCAAcGcGGCGCGc -3' miRNA: 3'- -CGUGgCCUUGAag---AGGUU-CuCCGUGC- -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 17876 | 0.68 | 0.801807 |
Target: 5'- gGCugCGGAAC--CUCCAuGAGGUucuCGc -3' miRNA: 3'- -CGugGCCUUGaaGAGGUuCUCCGu--GC- -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 18301 | 0.68 | 0.82045 |
Target: 5'- aCAcCCGGGGgUgcgCCGGGAGGCGCu -3' miRNA: 3'- cGU-GGCCUUgAagaGGUUCUCCGUGc -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 33318 | 0.67 | 0.838318 |
Target: 5'- aCGCCGGGACgUUCgccgUCCA--GGGCACc -3' miRNA: 3'- cGUGGCCUUG-AAG----AGGUucUCCGUGc -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 2658 | 0.67 | 0.838318 |
Target: 5'- aGC-CCGGGucuccuACgUCUCCGAGcgucacuGGCGCGa -3' miRNA: 3'- -CGuGGCCU------UGaAGAGGUUCu------CCGUGC- -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 34859 | 0.67 | 0.85284 |
Target: 5'- -uGgCGGAGCUUCUUgcccccuacuucgaCAAGGGGCGgCGg -3' miRNA: 3'- cgUgGCCUUGAAGAG--------------GUUCUCCGU-GC- -5' |
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18331 | 3' | -53.1 | NC_004681.1 | + | 62454 | 0.67 | 0.855335 |
Target: 5'- -aACCcGAAUgg--CCGAGGGGCACGa -3' miRNA: 3'- cgUGGcCUUGaagaGGUUCUCCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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