Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18331 | 5' | -62.4 | NC_004681.1 | + | 61017 | 1.08 | 0.000372 |
Target: 5'- uUCCGCUGCCCGCGAAGGGGUCCAGCAc -3' miRNA: 3'- -AGGCGACGGGCGCUUCCCCAGGUCGU- -5' |
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18331 | 5' | -62.4 | NC_004681.1 | + | 28219 | 0.7 | 0.245445 |
Target: 5'- gCCGUUGCCCGCGggGccgucgcuGGUCCcGUu -3' miRNA: 3'- aGGCGACGGGCGCuuCc-------CCAGGuCGu -5' |
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18331 | 5' | -62.4 | NC_004681.1 | + | 366 | 0.69 | 0.28615 |
Target: 5'- aUCCGCgaggacgaGCCCGCGGucaagaccuggggcaAGGGcaCCGGCAc -3' miRNA: 3'- -AGGCGa-------CGGGCGCU---------------UCCCcaGGUCGU- -5' |
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18331 | 5' | -62.4 | NC_004681.1 | + | 3466 | 0.68 | 0.341169 |
Target: 5'- uUCCGCUGCaggcggaaCgGUGAcaugucggaguAGGcGGUCCAGCu -3' miRNA: 3'- -AGGCGACG--------GgCGCU-----------UCC-CCAGGUCGu -5' |
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18331 | 5' | -62.4 | NC_004681.1 | + | 26344 | 0.67 | 0.356863 |
Target: 5'- gUCCGUcaUGCCCcaccGCGuAGGGGG-CgGGCAu -3' miRNA: 3'- -AGGCG--ACGGG----CGC-UUCCCCaGgUCGU- -5' |
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18331 | 5' | -62.4 | NC_004681.1 | + | 22501 | 0.67 | 0.364899 |
Target: 5'- gUUGCcGUCCGCGGccGGGGUgaCCAGCGu -3' miRNA: 3'- aGGCGaCGGGCGCUu-CCCCA--GGUCGU- -5' |
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18331 | 5' | -62.4 | NC_004681.1 | + | 12071 | 0.66 | 0.398269 |
Target: 5'- -gCGgUGCCCaCGAGGGGacguucUCCAGCGg -3' miRNA: 3'- agGCgACGGGcGCUUCCCc-----AGGUCGU- -5' |
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18331 | 5' | -62.4 | NC_004681.1 | + | 48706 | 0.66 | 0.399989 |
Target: 5'- uUCgGCUucgagucGCCCGCGGucaacgagcugcgcuGGGucuccuuGGUCCAGCAc -3' miRNA: 3'- -AGgCGA-------CGGGCGCU---------------UCC-------CCAGGUCGU- -5' |
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18331 | 5' | -62.4 | NC_004681.1 | + | 44228 | 0.66 | 0.406912 |
Target: 5'- --gGCcagGCCCGCGGccucGGGGGUgaGGCAg -3' miRNA: 3'- aggCGa--CGGGCGCU----UCCCCAggUCGU- -5' |
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18331 | 5' | -62.4 | NC_004681.1 | + | 44850 | 0.66 | 0.424547 |
Target: 5'- --aGCcGCCCGCGAGGGaGUCCucgacgucgaaGGCGc -3' miRNA: 3'- aggCGaCGGGCGCUUCCcCAGG-----------UCGU- -5' |
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18331 | 5' | -62.4 | NC_004681.1 | + | 22719 | 0.66 | 0.424547 |
Target: 5'- -gCGCUGCCCGCGGuguccguggagaAGGaGG-UgGGCAc -3' miRNA: 3'- agGCGACGGGCGCU------------UCC-CCaGgUCGU- -5' |
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18331 | 5' | -62.4 | NC_004681.1 | + | 13125 | 0.66 | 0.441715 |
Target: 5'- cCCGCUGCCCGCcaccgcccuucguGGcacGGcGGGUaCgGGCGg -3' miRNA: 3'- aGGCGACGGGCG-------------CU---UC-CCCA-GgUCGU- -5' |
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18331 | 5' | -62.4 | NC_004681.1 | + | 19026 | 0.66 | 0.44263 |
Target: 5'- uUCUGCgcuCCCGCGAcgggagccuGGGGaCCGGCc -3' miRNA: 3'- -AGGCGac-GGGCGCUu--------CCCCaGGUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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