miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18332 3' -55 NC_004681.1 + 58750 0.66 0.824875
Target:  5'- cCCGCGGCGCaGGC-GGccGuGGCGCa -3'
miRNA:   3'- -GGUGUCGCGgUUGaCCaaCuCCGUGc -5'
18332 3' -55 NC_004681.1 + 65183 0.66 0.824875
Target:  5'- gCCGCcaAGCGCCAccuggacgcCUGGUggGAGGguCa -3'
miRNA:   3'- -GGUG--UCGCGGUu--------GACCAa-CUCCguGc -5'
18332 3' -55 NC_004681.1 + 28392 0.66 0.824875
Target:  5'- cCCAUGGUgaggGUCAGCUgcuugGGUUGGGGCuugACGa -3'
miRNA:   3'- -GGUGUCG----CGGUUGA-----CCAACUCCG---UGC- -5'
18332 3' -55 NC_004681.1 + 5905 0.66 0.824875
Target:  5'- gCCGCAGUaCCA---GGUUGGGGCGg- -3'
miRNA:   3'- -GGUGUCGcGGUugaCCAACUCCGUgc -5'
18332 3' -55 NC_004681.1 + 45802 0.66 0.824875
Target:  5'- aCGCGGCGCUgguACUcGgcGAGGCGgGg -3'
miRNA:   3'- gGUGUCGCGGu--UGAcCaaCUCCGUgC- -5'
18332 3' -55 NC_004681.1 + 47169 0.66 0.815837
Target:  5'- uUCGCGGCGgCGuucCUGGcgGGGuGCGCGc -3'
miRNA:   3'- -GGUGUCGCgGUu--GACCaaCUC-CGUGC- -5'
18332 3' -55 NC_004681.1 + 6469 0.66 0.815837
Target:  5'- uCgACAGCGCCAuc-GGgcGuGGCGCc -3'
miRNA:   3'- -GgUGUCGCGGUugaCCaaCuCCGUGc -5'
18332 3' -55 NC_004681.1 + 56322 0.66 0.806615
Target:  5'- cCCACGGCGCCAagGCguccaaGGUgca-GCGCGc -3'
miRNA:   3'- -GGUGUCGCGGU--UGa-----CCAacucCGUGC- -5'
18332 3' -55 NC_004681.1 + 13010 0.66 0.806615
Target:  5'- -gACAGUG-CGGCUGGUc--GGCACGa -3'
miRNA:   3'- ggUGUCGCgGUUGACCAacuCCGUGC- -5'
18332 3' -55 NC_004681.1 + 17358 0.66 0.806615
Target:  5'- cCCGC--CGCCcGCguaGUUGAGGUACGg -3'
miRNA:   3'- -GGUGucGCGGuUGac-CAACUCCGUGC- -5'
18332 3' -55 NC_004681.1 + 39322 0.66 0.787653
Target:  5'- gCGCGGCGCCGcGCUGGacacggcuccGAGGgGCc -3'
miRNA:   3'- gGUGUCGCGGU-UGACCaa--------CUCCgUGc -5'
18332 3' -55 NC_004681.1 + 4291 0.67 0.777934
Target:  5'- -uGCGG-GCCAauccuGCUGGUUuGGGCugGa -3'
miRNA:   3'- ggUGUCgCGGU-----UGACCAAcUCCGugC- -5'
18332 3' -55 NC_004681.1 + 54813 0.67 0.768071
Target:  5'- aCGUAGCGCC-ACUGGUgca-GCACGg -3'
miRNA:   3'- gGUGUCGCGGuUGACCAacucCGUGC- -5'
18332 3' -55 NC_004681.1 + 7061 0.67 0.76807
Target:  5'- aCCGCGGCGCCA--UGaagGAcGGCACc -3'
miRNA:   3'- -GGUGUCGCGGUugACcaaCU-CCGUGc -5'
18332 3' -55 NC_004681.1 + 50329 0.67 0.758072
Target:  5'- uCCACaagccgagGGCGCCAuuggaGCUGGcgaccaccUUGGGGUGCu -3'
miRNA:   3'- -GGUG--------UCGCGGU-----UGACC--------AACUCCGUGc -5'
18332 3' -55 NC_004681.1 + 27710 0.67 0.758072
Target:  5'- gCCGcCAGCGCCAcCgagGGUgacccAGGCGCc -3'
miRNA:   3'- -GGU-GUCGCGGUuGa--CCAac---UCCGUGc -5'
18332 3' -55 NC_004681.1 + 59875 0.67 0.758072
Target:  5'- gUC-CAGCGagcACUGGgcGAGGCACu -3'
miRNA:   3'- -GGuGUCGCgguUGACCaaCUCCGUGc -5'
18332 3' -55 NC_004681.1 + 29508 0.67 0.737716
Target:  5'- gCCAguGaCGCCAgaccacgcGgUGGUgGAGGCGCu -3'
miRNA:   3'- -GGUguC-GCGGU--------UgACCAaCUCCGUGc -5'
18332 3' -55 NC_004681.1 + 26224 0.68 0.728418
Target:  5'- gCCACGGCGgCGAUgcccgcccccuacgcGG-UGGGGCAUGa -3'
miRNA:   3'- -GGUGUCGCgGUUGa--------------CCaACUCCGUGC- -5'
18332 3' -55 NC_004681.1 + 28037 0.68 0.72738
Target:  5'- aCCgACGGCGCUGGCgcuggcGGUcGAGGCggugGCGg -3'
miRNA:   3'- -GG-UGUCGCGGUUGa-----CCAaCUCCG----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.