Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18332 | 3' | -55 | NC_004681.1 | + | 70750 | 0.73 | 0.434708 |
Target: 5'- -gACGGUGCCAGCUGGcUUGAGuuugauaGCGCu -3' miRNA: 3'- ggUGUCGCGGUUGACC-AACUC-------CGUGc -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 68525 | 0.69 | 0.620737 |
Target: 5'- gCCugGGCGCCAugccGgUGGUUcuccccgaGGGGCAgGa -3' miRNA: 3'- -GGugUCGCGGU----UgACCAA--------CUCCGUgC- -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 65183 | 0.66 | 0.824875 |
Target: 5'- gCCGCcaAGCGCCAccuggacgcCUGGUggGAGGguCa -3' miRNA: 3'- -GGUG--UCGCGGUu--------GACCAa-CUCCguGc -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 64961 | 0.69 | 0.66382 |
Target: 5'- gCGCgAGCcuucaCCAGCUGGgUGAGGuCGCGg -3' miRNA: 3'- gGUG-UCGc----GGUUGACCaACUCC-GUGC- -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 64915 | 0.69 | 0.66382 |
Target: 5'- cCCGCGGCGCCcgcCUGGagcacGAGGUgGCGa -3' miRNA: 3'- -GGUGUCGCGGuu-GACCaa---CUCCG-UGC- -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 61994 | 1.1 | 0.001406 |
Target: 5'- gCCACAGCGCCAACUGGUUGAGGCACGc -3' miRNA: 3'- -GGUGUCGCGGUUGACCAACUCCGUGC- -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 59875 | 0.67 | 0.758072 |
Target: 5'- gUC-CAGCGagcACUGGgcGAGGCACu -3' miRNA: 3'- -GGuGUCGCgguUGACCaaCUCCGUGc -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 58750 | 0.66 | 0.824875 |
Target: 5'- cCCGCGGCGCaGGC-GGccGuGGCGCa -3' miRNA: 3'- -GGUGUCGCGgUUGaCCaaCuCCGUGc -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 58567 | 0.69 | 0.641219 |
Target: 5'- aCGCGGCGcCCAGCUGuucGUUGAuccacuugacgugGGCGCc -3' miRNA: 3'- gGUGUCGC-GGUUGAC---CAACU-------------CCGUGc -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 56412 | 0.7 | 0.609967 |
Target: 5'- uCCGCAGCGCaCAcCUGuugGAGGCGgGc -3' miRNA: 3'- -GGUGUCGCG-GUuGACcaaCUCCGUgC- -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 56322 | 0.66 | 0.806615 |
Target: 5'- cCCACGGCGCCAagGCguccaaGGUgca-GCGCGc -3' miRNA: 3'- -GGUGUCGCGGU--UGa-----CCAacucCGUGC- -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 54813 | 0.67 | 0.768071 |
Target: 5'- aCGUAGCGCC-ACUGGUgca-GCACGg -3' miRNA: 3'- gGUGUCGCGGuUGACCAacucCGUGC- -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 50329 | 0.67 | 0.758072 |
Target: 5'- uCCACaagccgagGGCGCCAuuggaGCUGGcgaccaccUUGGGGUGCu -3' miRNA: 3'- -GGUG--------UCGCGGU-----UGACC--------AACUCCGUGc -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 49432 | 0.68 | 0.716952 |
Target: 5'- cCCGCGGCGCCGcCgUGGcggacggUGAGGUuguGCa -3' miRNA: 3'- -GGUGUCGCGGUuG-ACCa------ACUCCG---UGc -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 47169 | 0.66 | 0.815837 |
Target: 5'- uUCGCGGCGgCGuucCUGGcgGGGuGCGCGc -3' miRNA: 3'- -GGUGUCGCgGUu--GACCaaCUC-CGUGC- -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 45802 | 0.66 | 0.824875 |
Target: 5'- aCGCGGCGCUgguACUcGgcGAGGCGgGg -3' miRNA: 3'- gGUGUCGCGGu--UGAcCaaCUCCGUgC- -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 40057 | 0.68 | 0.689491 |
Target: 5'- aCC-CGGCGCCGACgcgcgcggaucgacuUGucGUUGAGGCggGCGa -3' miRNA: 3'- -GGuGUCGCGGUUG---------------AC--CAACUCCG--UGC- -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 39322 | 0.66 | 0.787653 |
Target: 5'- gCGCGGCGCCGcGCUGGacacggcuccGAGGgGCc -3' miRNA: 3'- gGUGUCGCGGU-UGACCaa--------CUCCgUGc -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 31225 | 0.69 | 0.66382 |
Target: 5'- aUCGCAGCGUgG-CUGGggGAccGGCGCc -3' miRNA: 3'- -GGUGUCGCGgUuGACCaaCU--CCGUGc -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 30714 | 0.69 | 0.66382 |
Target: 5'- uCCACAGUGCCGAaUGGgccacGCACGc -3' miRNA: 3'- -GGUGUCGCGGUUgACCaacucCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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