miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18332 3' -55 NC_004681.1 + 25243 0.73 0.407816
Target:  5'- gCCAUGGCGCCcGCggcggcGGUUGGGuGCGCu -3'
miRNA:   3'- -GGUGUCGCGGuUGa-----CCAACUC-CGUGc -5'
18332 3' -55 NC_004681.1 + 14299 0.68 0.716952
Target:  5'- gCGCAGgGUgAGCUucaGGUcgccGAGGCGCGg -3'
miRNA:   3'- gGUGUCgCGgUUGA---CCAa---CUCCGUGC- -5'
18332 3' -55 NC_004681.1 + 28037 0.68 0.72738
Target:  5'- aCCgACGGCGCUGGCgcuggcGGUcGAGGCggugGCGg -3'
miRNA:   3'- -GG-UGUCGCGGUUGa-----CCAaCUCCG----UGC- -5'
18332 3' -55 NC_004681.1 + 26224 0.68 0.728418
Target:  5'- gCCACGGCGgCGAUgcccgcccccuacgcGG-UGGGGCAUGa -3'
miRNA:   3'- -GGUGUCGCgGUUGa--------------CCaACUCCGUGC- -5'
18332 3' -55 NC_004681.1 + 7061 0.67 0.76807
Target:  5'- aCCGCGGCGCCA--UGaagGAcGGCACc -3'
miRNA:   3'- -GGUGUCGCGGUugACcaaCU-CCGUGc -5'
18332 3' -55 NC_004681.1 + 4291 0.67 0.777934
Target:  5'- -uGCGG-GCCAauccuGCUGGUUuGGGCugGa -3'
miRNA:   3'- ggUGUCgCGGU-----UGACCAAcUCCGugC- -5'
18332 3' -55 NC_004681.1 + 39322 0.66 0.787653
Target:  5'- gCGCGGCGCCGcGCUGGacacggcuccGAGGgGCc -3'
miRNA:   3'- gGUGUCGCGGU-UGACCaa--------CUCCgUGc -5'
18332 3' -55 NC_004681.1 + 56322 0.66 0.806615
Target:  5'- cCCACGGCGCCAagGCguccaaGGUgca-GCGCGc -3'
miRNA:   3'- -GGUGUCGCGGU--UGa-----CCAacucCGUGC- -5'
18332 3' -55 NC_004681.1 + 65183 0.66 0.824875
Target:  5'- gCCGCcaAGCGCCAccuggacgcCUGGUggGAGGguCa -3'
miRNA:   3'- -GGUG--UCGCGGUu--------GACCAa-CUCCguGc -5'
18332 3' -55 NC_004681.1 + 22691 0.68 0.695867
Target:  5'- cCCAaggaguGGCGCCccCUGGUguGGGCACa -3'
miRNA:   3'- -GGUg-----UCGCGGuuGACCAacUCCGUGc -5'
18332 3' -55 NC_004681.1 + 24487 0.68 0.68523
Target:  5'- uUC-CAGCGCUAcgaGCUGGaUGAGGCcCu -3'
miRNA:   3'- -GGuGUCGCGGU---UGACCaACUCCGuGc -5'
18332 3' -55 NC_004681.1 + 64915 0.69 0.66382
Target:  5'- cCCGCGGCGCCcgcCUGGagcacGAGGUgGCGa -3'
miRNA:   3'- -GGUGUCGCGGuu-GACCaa---CUCCG-UGC- -5'
18332 3' -55 NC_004681.1 + 70750 0.73 0.434708
Target:  5'- -gACGGUGCCAGCUGGcUUGAGuuugauaGCGCu -3'
miRNA:   3'- ggUGUCGCGGUUGACC-AACUC-------CGUGc -5'
18332 3' -55 NC_004681.1 + 3043 0.71 0.535549
Target:  5'- cCCGCGGCGCCAAgggcCUGGU---GGCAg- -3'
miRNA:   3'- -GGUGUCGCGGUU----GACCAacuCCGUgc -5'
18332 3' -55 NC_004681.1 + 2912 0.71 0.546022
Target:  5'- uCCugGGgGCCuGGCUGGgcGAcGGCACc -3'
miRNA:   3'- -GGugUCgCGG-UUGACCaaCU-CCGUGc -5'
18332 3' -55 NC_004681.1 + 25380 0.71 0.546022
Target:  5'- aUCACGGUGCgAGC-GGaagGAGGUACGg -3'
miRNA:   3'- -GGUGUCGCGgUUGaCCaa-CUCCGUGC- -5'
18332 3' -55 NC_004681.1 + 56412 0.7 0.609967
Target:  5'- uCCGCAGCGCaCAcCUGuugGAGGCGgGc -3'
miRNA:   3'- -GGUGUCGCG-GUuGACcaaCUCCGUgC- -5'
18332 3' -55 NC_004681.1 + 27814 0.69 0.620737
Target:  5'- gCgGCGGCGCCAAC-GGU---GGCGCa -3'
miRNA:   3'- -GgUGUCGCGGUUGaCCAacuCCGUGc -5'
18332 3' -55 NC_004681.1 + 68525 0.69 0.620737
Target:  5'- gCCugGGCGCCAugccGgUGGUUcuccccgaGGGGCAgGa -3'
miRNA:   3'- -GGugUCGCGGU----UgACCAA--------CUCCGUgC- -5'
18332 3' -55 NC_004681.1 + 31225 0.69 0.66382
Target:  5'- aUCGCAGCGUgG-CUGGggGAccGGCGCc -3'
miRNA:   3'- -GGUGUCGCGgUuGACCaaCU--CCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.