Results 41 - 43 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18332 | 3' | -55 | NC_004681.1 | + | 49432 | 0.68 | 0.716952 |
Target: 5'- cCCGCGGCGCCGcCgUGGcggacggUGAGGUuguGCa -3' miRNA: 3'- -GGUGUCGCGGUuG-ACCa------ACUCCG---UGc -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 17942 | 0.68 | 0.716952 |
Target: 5'- gCCGgGGCGCCcgggUUGG-UGAGGC-CGg -3' miRNA: 3'- -GGUgUCGCGGuu--GACCaACUCCGuGC- -5' |
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18332 | 3' | -55 | NC_004681.1 | + | 61994 | 1.1 | 0.001406 |
Target: 5'- gCCACAGCGCCAACUGGUUGAGGCACGc -3' miRNA: 3'- -GGUGUCGCGGUUGACCAACUCCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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