miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18332 5' -51.8 NC_004681.1 + 30692 0.66 0.933182
Target:  5'- -gCACGCCGUCAggcaGCGAAccgccuUGGcGCUUg -3'
miRNA:   3'- aaGUGCGGCAGU----UGCUUc-----ACCaUGAG- -5'
18332 5' -51.8 NC_004681.1 + 46798 0.66 0.921668
Target:  5'- -gCGCGCCGUCGAgGAA----UACUCg -3'
miRNA:   3'- aaGUGCGGCAGUUgCUUcaccAUGAG- -5'
18332 5' -51.8 NC_004681.1 + 63866 0.67 0.895262
Target:  5'- cUCGCGCCGUgGuCGAAuUGGaaagACUCc -3'
miRNA:   3'- aAGUGCGGCAgUuGCUUcACCa---UGAG- -5'
18332 5' -51.8 NC_004681.1 + 41681 0.67 0.887972
Target:  5'- gUUCAuCGCCGUgCGcugccuGCGggGUGGcGCUg -3'
miRNA:   3'- -AAGU-GCGGCA-GU------UGCuuCACCaUGAg -5'
18332 5' -51.8 NC_004681.1 + 39962 0.67 0.880414
Target:  5'- -cCGCGCgCGUCGGCGccG-GGUcaACUCa -3'
miRNA:   3'- aaGUGCG-GCAGUUGCuuCaCCA--UGAG- -5'
18332 5' -51.8 NC_004681.1 + 51989 0.67 0.880414
Target:  5'- --gACGCCucccugcguGUCGAgGAAGUGGU-CUCc -3'
miRNA:   3'- aagUGCGG---------CAGUUgCUUCACCAuGAG- -5'
18332 5' -51.8 NC_004681.1 + 51159 0.67 0.872595
Target:  5'- cUCAgGCCGUCGAgGAGGUcauaACUCu -3'
miRNA:   3'- aAGUgCGGCAGUUgCUUCAcca-UGAG- -5'
18332 5' -51.8 NC_004681.1 + 17902 0.67 0.86452
Target:  5'- --gGCGgCGgCGGCGAGGguccGGUACUCa -3'
miRNA:   3'- aagUGCgGCaGUUGCUUCa---CCAUGAG- -5'
18332 5' -51.8 NC_004681.1 + 65584 0.67 0.863699
Target:  5'- aUUUugGCCGUCAcgacagcccccuuACauucuGAGUGGUGCUa -3'
miRNA:   3'- -AAGugCGGCAGU-------------UGc----UUCACCAUGAg -5'
18332 5' -51.8 NC_004681.1 + 39487 0.68 0.856198
Target:  5'- cUCAagGCCGguggCAGCGAGGcGGgACUCa -3'
miRNA:   3'- aAGUg-CGGCa---GUUGCUUCaCCaUGAG- -5'
18332 5' -51.8 NC_004681.1 + 29153 0.68 0.847636
Target:  5'- gUCACcCCGgaaAACGAGGU-GUACUCg -3'
miRNA:   3'- aAGUGcGGCag-UUGCUUCAcCAUGAG- -5'
18332 5' -51.8 NC_004681.1 + 30206 0.68 0.829825
Target:  5'- aUCAUGCCGgaacCGAAgccGUGGUugUCa -3'
miRNA:   3'- aAGUGCGGCaguuGCUU---CACCAugAG- -5'
18332 5' -51.8 NC_004681.1 + 7709 0.68 0.820596
Target:  5'- gUCugGCCaucGUCGGCGAAGUcgcgggcguaGGUGCcaUCa -3'
miRNA:   3'- aAGugCGG---CAGUUGCUUCA----------CCAUG--AG- -5'
18332 5' -51.8 NC_004681.1 + 34437 0.69 0.801538
Target:  5'- cUCACGCCGccgCGGCGuAAGacuucgGGUGCUg -3'
miRNA:   3'- aAGUGCGGCa--GUUGC-UUCa-----CCAUGAg -5'
18332 5' -51.8 NC_004681.1 + 16439 0.69 0.77162
Target:  5'- -cCAcCGCCG-CAGCGGAGaUGGccUGCUCg -3'
miRNA:   3'- aaGU-GCGGCaGUUGCUUC-ACC--AUGAG- -5'
18332 5' -51.8 NC_004681.1 + 68224 0.73 0.575261
Target:  5'- cUUCAUGUCGgUGAUGAAGUGGUACg- -3'
miRNA:   3'- -AAGUGCGGCaGUUGCUUCACCAUGag -5'
18332 5' -51.8 NC_004681.1 + 32897 0.73 0.553344
Target:  5'- cUUCACGCCGUCcugGACGGAcuccUGGUACg- -3'
miRNA:   3'- -AAGUGCGGCAG---UUGCUUc---ACCAUGag -5'
18332 5' -51.8 NC_004681.1 + 60567 0.77 0.37333
Target:  5'- cUCGgGCCGcuggcCGACGAAcGUGGUGCUCg -3'
miRNA:   3'- aAGUgCGGCa----GUUGCUU-CACCAUGAG- -5'
18332 5' -51.8 NC_004681.1 + 61952 1.08 0.003254
Target:  5'- gUUCACGCCGUCAACGAAGUGGUACUCg -3'
miRNA:   3'- -AAGUGCGGCAGUUGCUUCACCAUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.