miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18333 3' -56.7 NC_004681.1 + 75655 0.66 0.728153
Target:  5'- uGCGuuguGGCaCGUGGCGCaaAGGGCUcuaccgugUCGUg -3'
miRNA:   3'- gUGCu---UCG-GCAUUGCG--UCCCGG--------AGCA- -5'
18333 3' -56.7 NC_004681.1 + 4169 0.66 0.728153
Target:  5'- gCGCGggGuuG--GCGUGGGGCCagcacuccUCGUu -3'
miRNA:   3'- -GUGCuuCggCauUGCGUCCCGG--------AGCA- -5'
18333 3' -56.7 NC_004681.1 + 6678 0.66 0.707408
Target:  5'- cCAUGgcGCCcuugacGgcGCGCAGGuGCUUCGg -3'
miRNA:   3'- -GUGCuuCGG------CauUGCGUCC-CGGAGCa -5'
18333 3' -56.7 NC_004681.1 + 62339 0.66 0.707408
Target:  5'- gACGAGGCCcu-GCGUuacGGCUUCGUg -3'
miRNA:   3'- gUGCUUCGGcauUGCGuc-CCGGAGCA- -5'
18333 3' -56.7 NC_004681.1 + 12993 0.66 0.707408
Target:  5'- gCACGAAGCCGgugugGGuguggucaccCGCAGcGGCCguaGUg -3'
miRNA:   3'- -GUGCUUCGGCa----UU----------GCGUC-CCGGag-CA- -5'
18333 3' -56.7 NC_004681.1 + 25060 0.66 0.695874
Target:  5'- -cCGucGCCGggggugaacuggaUGAUGCGGGGCCgUCGa -3'
miRNA:   3'- guGCuuCGGC-------------AUUGCGUCCCGG-AGCa -5'
18333 3' -56.7 NC_004681.1 + 39425 0.67 0.686385
Target:  5'- -uCGGAGCCGUGuccaGCGCGGcGCCgcgCGc -3'
miRNA:   3'- guGCUUCGGCAU----UGCGUCcCGGa--GCa -5'
18333 3' -56.7 NC_004681.1 + 46932 0.67 0.675795
Target:  5'- -cCGggGCgGUugcCGCGGGGCugcguCUCGUa -3'
miRNA:   3'- guGCuuCGgCAuu-GCGUCCCG-----GAGCA- -5'
18333 3' -56.7 NC_004681.1 + 47479 0.67 0.669421
Target:  5'- cCGCGucGCCGUGGCGCGuuggcGGGCgacuaaguagucgacUUCGUu -3'
miRNA:   3'- -GUGCuuCGGCAUUGCGU-----CCCG---------------GAGCA- -5'
18333 3' -56.7 NC_004681.1 + 31904 0.67 0.665166
Target:  5'- uCGCGGcGGCCGccauCGC-GGGCCUCa- -3'
miRNA:   3'- -GUGCU-UCGGCauu-GCGuCCCGGAGca -5'
18333 3' -56.7 NC_004681.1 + 17801 0.67 0.654507
Target:  5'- cCACGcAGGCCGacaucAACGCGGcGGCCgCGc -3'
miRNA:   3'- -GUGC-UUCGGCa----UUGCGUC-CCGGaGCa -5'
18333 3' -56.7 NC_004681.1 + 40294 0.67 0.632073
Target:  5'- cCACGAccccaggAGCCGgucgauuGCGCGGGucuaucucaucGCCUCGa -3'
miRNA:   3'- -GUGCU-------UCGGCau-----UGCGUCC-----------CGGAGCa -5'
18333 3' -56.7 NC_004681.1 + 28224 0.68 0.622453
Target:  5'- -cCGccGCCGUugccCGCGGGGCCgUCGc -3'
miRNA:   3'- guGCuuCGGCAuu--GCGUCCCGG-AGCa -5'
18333 3' -56.7 NC_004681.1 + 6519 0.68 0.601109
Target:  5'- aCGCGAcaggagugcuGGCCGgucgcuucGGCGcCGGGGCCUCc- -3'
miRNA:   3'- -GUGCU----------UCGGCa-------UUGC-GUCCCGGAGca -5'
18333 3' -56.7 NC_004681.1 + 48675 0.68 0.601109
Target:  5'- uGCGAGGgCGUGGCccacgaugcaGCAGGGCUggGUg -3'
miRNA:   3'- gUGCUUCgGCAUUG----------CGUCCCGGagCA- -5'
18333 3' -56.7 NC_004681.1 + 36326 0.68 0.579864
Target:  5'- -cCGucGAGUCGUAGUGguGGGCUUCGUg -3'
miRNA:   3'- guGC--UUCGGCAUUGCguCCCGGAGCA- -5'
18333 3' -56.7 NC_004681.1 + 69008 0.69 0.527591
Target:  5'- gGCGGcGGCCGUGACGaugguCAGcGCCUCGa -3'
miRNA:   3'- gUGCU-UCGGCAUUGC-----GUCcCGGAGCa -5'
18333 3' -56.7 NC_004681.1 + 7695 0.69 0.517335
Target:  5'- gGCGAAGUCGcgGGCGUAGGuGCCaUCa- -3'
miRNA:   3'- gUGCUUCGGCa-UUGCGUCC-CGG-AGca -5'
18333 3' -56.7 NC_004681.1 + 7576 0.7 0.497071
Target:  5'- -cCGGAGCgucCG-AACGCAGGGCCUgGc -3'
miRNA:   3'- guGCUUCG---GCaUUGCGUCCCGGAgCa -5'
18333 3' -56.7 NC_004681.1 + 45182 0.71 0.448086
Target:  5'- aGCGAGaCCGcGGCG-AGGGCCUCGa -3'
miRNA:   3'- gUGCUUcGGCaUUGCgUCCCGGAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.