Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18333 | 3' | -56.7 | NC_004681.1 | + | 45082 | 0.71 | 0.42001 |
Target: 5'- cCACGAGGCCGaggauGCaGCAGGGCUcaUUGg -3' miRNA: 3'- -GUGCUUCGGCau---UG-CGUCCCGG--AGCa -5' |
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18333 | 3' | -56.7 | NC_004681.1 | + | 27894 | 0.71 | 0.401002 |
Target: 5'- gGCGGcaccaacucguccAGUagCGgcACGCGGGGCCUCGg -3' miRNA: 3'- gUGCU-------------UCG--GCauUGCGUCCCGGAGCa -5' |
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18333 | 3' | -56.7 | NC_004681.1 | + | 58749 | 0.73 | 0.333819 |
Target: 5'- cCGCGGcgcaggcGGCCGUGGCGCAGGacaCCUUGa -3' miRNA: 3'- -GUGCU-------UCGGCAUUGCGUCCc--GGAGCa -5' |
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18333 | 3' | -56.7 | NC_004681.1 | + | 16524 | 0.73 | 0.319125 |
Target: 5'- cCAUGGgucaucagccAGCCGUAGCGCAuGGCCUgGUc -3' miRNA: 3'- -GUGCU----------UCGGCAUUGCGUcCCGGAgCA- -5' |
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18333 | 3' | -56.7 | NC_004681.1 | + | 12561 | 0.75 | 0.262618 |
Target: 5'- gUACGAAccGCuCGUGGC-CGGGGCCUCGa -3' miRNA: 3'- -GUGCUU--CG-GCAUUGcGUCCCGGAGCa -5' |
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18333 | 3' | -56.7 | NC_004681.1 | + | 67328 | 0.79 | 0.144571 |
Target: 5'- -uCGAccuGGCCGUGuCGCAGGGCCUgGUg -3' miRNA: 3'- guGCU---UCGGCAUuGCGUCCCGGAgCA- -5' |
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18333 | 3' | -56.7 | NC_004681.1 | + | 62441 | 1.06 | 0.001629 |
Target: 5'- cCACGAAGCCGUAACGCAGGGCCUCGUc -3' miRNA: 3'- -GUGCUUCGGCAUUGCGUCCCGGAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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