Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18333 | 3' | -56.7 | NC_004681.1 | + | 48675 | 0.68 | 0.601109 |
Target: 5'- uGCGAGGgCGUGGCccacgaugcaGCAGGGCUggGUg -3' miRNA: 3'- gUGCUUCgGCAUUG----------CGUCCCGGagCA- -5' |
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18333 | 3' | -56.7 | NC_004681.1 | + | 58749 | 0.73 | 0.333819 |
Target: 5'- cCGCGGcgcaggcGGCCGUGGCGCAGGacaCCUUGa -3' miRNA: 3'- -GUGCU-------UCGGCAUUGCGUCCc--GGAGCa -5' |
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18333 | 3' | -56.7 | NC_004681.1 | + | 62339 | 0.66 | 0.707408 |
Target: 5'- gACGAGGCCcu-GCGUuacGGCUUCGUg -3' miRNA: 3'- gUGCUUCGGcauUGCGuc-CCGGAGCA- -5' |
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18333 | 3' | -56.7 | NC_004681.1 | + | 62441 | 1.06 | 0.001629 |
Target: 5'- cCACGAAGCCGUAACGCAGGGCCUCGUc -3' miRNA: 3'- -GUGCUUCGGCAUUGCGUCCCGGAGCA- -5' |
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18333 | 3' | -56.7 | NC_004681.1 | + | 67328 | 0.79 | 0.144571 |
Target: 5'- -uCGAccuGGCCGUGuCGCAGGGCCUgGUg -3' miRNA: 3'- guGCU---UCGGCAUuGCGUCCCGGAgCA- -5' |
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18333 | 3' | -56.7 | NC_004681.1 | + | 69008 | 0.69 | 0.527591 |
Target: 5'- gGCGGcGGCCGUGACGaugguCAGcGCCUCGa -3' miRNA: 3'- gUGCU-UCGGCAUUGC-----GUCcCGGAGCa -5' |
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18333 | 3' | -56.7 | NC_004681.1 | + | 75655 | 0.66 | 0.728153 |
Target: 5'- uGCGuuguGGCaCGUGGCGCaaAGGGCUcuaccgugUCGUg -3' miRNA: 3'- gUGCu---UCG-GCAUUGCG--UCCCGG--------AGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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