miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18333 3' -56.7 NC_004681.1 + 48675 0.68 0.601109
Target:  5'- uGCGAGGgCGUGGCccacgaugcaGCAGGGCUggGUg -3'
miRNA:   3'- gUGCUUCgGCAUUG----------CGUCCCGGagCA- -5'
18333 3' -56.7 NC_004681.1 + 58749 0.73 0.333819
Target:  5'- cCGCGGcgcaggcGGCCGUGGCGCAGGacaCCUUGa -3'
miRNA:   3'- -GUGCU-------UCGGCAUUGCGUCCc--GGAGCa -5'
18333 3' -56.7 NC_004681.1 + 62339 0.66 0.707408
Target:  5'- gACGAGGCCcu-GCGUuacGGCUUCGUg -3'
miRNA:   3'- gUGCUUCGGcauUGCGuc-CCGGAGCA- -5'
18333 3' -56.7 NC_004681.1 + 62441 1.06 0.001629
Target:  5'- cCACGAAGCCGUAACGCAGGGCCUCGUc -3'
miRNA:   3'- -GUGCUUCGGCAUUGCGUCCCGGAGCA- -5'
18333 3' -56.7 NC_004681.1 + 67328 0.79 0.144571
Target:  5'- -uCGAccuGGCCGUGuCGCAGGGCCUgGUg -3'
miRNA:   3'- guGCU---UCGGCAUuGCGUCCCGGAgCA- -5'
18333 3' -56.7 NC_004681.1 + 69008 0.69 0.527591
Target:  5'- gGCGGcGGCCGUGACGaugguCAGcGCCUCGa -3'
miRNA:   3'- gUGCU-UCGGCAUUGC-----GUCcCGGAGCa -5'
18333 3' -56.7 NC_004681.1 + 75655 0.66 0.728153
Target:  5'- uGCGuuguGGCaCGUGGCGCaaAGGGCUcuaccgugUCGUg -3'
miRNA:   3'- gUGCu---UCG-GCAUUGCG--UCCCGG--------AGCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.