miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18333 5' -57.1 NC_004681.1 + 29497 0.66 0.734525
Target:  5'- aCCACC--UCGGUG-GCUgucacguucgcaUCCAaCCCGg -3'
miRNA:   3'- -GGUGGucAGCCACgCGA------------AGGUaGGGC- -5'
18333 5' -57.1 NC_004681.1 + 35631 0.66 0.724399
Target:  5'- -aACCcaUCGGcGCGCUUCCcgacacacgaaAUCCCGc -3'
miRNA:   3'- ggUGGucAGCCaCGCGAAGG-----------UAGGGC- -5'
18333 5' -57.1 NC_004681.1 + 62675 0.66 0.714188
Target:  5'- uCCGCC--UCGGcGCGCUcccggcguUCCAUCUCc -3'
miRNA:   3'- -GGUGGucAGCCaCGCGA--------AGGUAGGGc -5'
18333 5' -57.1 NC_004681.1 + 39509 0.67 0.693554
Target:  5'- cCCGCaucGUCGGcucUGCGCUUCagggaggacuuCAUUCCGg -3'
miRNA:   3'- -GGUGgu-CAGCC---ACGCGAAG-----------GUAGGGC- -5'
18333 5' -57.1 NC_004681.1 + 25258 0.67 0.678977
Target:  5'- gCGgCGGUUgGGUGCGCUUCUAcaagguugagucgCCCGa -3'
miRNA:   3'- gGUgGUCAG-CCACGCGAAGGUa------------GGGC- -5'
18333 5' -57.1 NC_004681.1 + 10226 0.67 0.672704
Target:  5'- aCCAgUAGUUGGUcaGCUccacccagUCCAUCCCa -3'
miRNA:   3'- -GGUgGUCAGCCAcgCGA--------AGGUAGGGc -5'
18333 5' -57.1 NC_004681.1 + 18389 0.67 0.651712
Target:  5'- aCCGCCAGUCGaGgacUGCggCCGUgCCGc -3'
miRNA:   3'- -GGUGGUCAGC-Cac-GCGaaGGUAgGGC- -5'
18333 5' -57.1 NC_004681.1 + 40281 0.68 0.609602
Target:  5'- -aGCCGGUCGauUGCGCgggUCUAUCUCa -3'
miRNA:   3'- ggUGGUCAGCc-ACGCGa--AGGUAGGGc -5'
18333 5' -57.1 NC_004681.1 + 53300 0.69 0.567771
Target:  5'- cUCGCaacUgGGUGCGCUUCCggGUCCUGg -3'
miRNA:   3'- -GGUGgucAgCCACGCGAAGG--UAGGGC- -5'
18333 5' -57.1 NC_004681.1 + 52193 0.69 0.526702
Target:  5'- gCGCaauGUUGGUGCGCU--CGUCCCa -3'
miRNA:   3'- gGUGgu-CAGCCACGCGAagGUAGGGc -5'
18333 5' -57.1 NC_004681.1 + 61421 0.71 0.457828
Target:  5'- uCCACCucgauGaCGGUGCGCUUgUcgCCCu -3'
miRNA:   3'- -GGUGGu----CaGCCACGCGAAgGuaGGGc -5'
18333 5' -57.1 NC_004681.1 + 31098 0.73 0.32103
Target:  5'- gCACCAGUCGuaguuGUGCGCccagUCCAgguccuugugcgUCCCGu -3'
miRNA:   3'- gGUGGUCAGC-----CACGCGa---AGGU------------AGGGC- -5'
18333 5' -57.1 NC_004681.1 + 16115 0.75 0.273555
Target:  5'- gCCGCCAcggcuguGUCGGguaucggcuucgcgGCGCUggcggCCAUCCCGu -3'
miRNA:   3'- -GGUGGU-------CAGCCa-------------CGCGAa----GGUAGGGC- -5'
18333 5' -57.1 NC_004681.1 + 62405 1.1 0.000974
Target:  5'- aCCACCAGUCGGUGCGCUUCCAUCCCGc -3'
miRNA:   3'- -GGUGGUCAGCCACGCGAAGGUAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.