miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18334 5' -63.1 NC_004681.1 + 39711 0.66 0.400871
Target:  5'- -uCCGuaGCCACCuccgguUCGCCGggGGuGg -3'
miRNA:   3'- gcGGCggCGGUGGu-----GGCGGCuuCCuC- -5'
18334 5' -63.1 NC_004681.1 + 3489 0.66 0.400023
Target:  5'- gCGCCGCgGCCAacuucucagacuuCCGCUGCaGgcGGAa -3'
miRNA:   3'- -GCGGCGgCGGU-------------GGUGGCGgCuuCCUc -5'
18334 5' -63.1 NC_004681.1 + 30690 0.67 0.392437
Target:  5'- aCGCCGucaggcagcgaaCCGCCuuggcGCUugCGCCGGuAGGAc -3'
miRNA:   3'- -GCGGC------------GGCGG-----UGGugGCGGCU-UCCUc -5'
18334 5' -63.1 NC_004681.1 + 6526 0.67 0.384118
Target:  5'- aGCCGCggCGCCucaugcagaaGCCACCcCCcAAGGAGu -3'
miRNA:   3'- gCGGCG--GCGG----------UGGUGGcGGcUUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 40476 0.67 0.384118
Target:  5'- aCGCCGCgGCCGaCGCCGCCa------ -3'
miRNA:   3'- -GCGGCGgCGGUgGUGGCGGcuuccuc -5'
18334 5' -63.1 NC_004681.1 + 37159 0.67 0.383293
Target:  5'- gGCCGCUGggaugagccaccCCAUCACCGaCCcuggcgauggccgGAAGGAGu -3'
miRNA:   3'- gCGGCGGC------------GGUGGUGGC-GG-------------CUUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 45427 0.67 0.367836
Target:  5'- uCGCCGCCuCCAUgGCCGCCcucGGuGu -3'
miRNA:   3'- -GCGGCGGcGGUGgUGGCGGcuuCCuC- -5'
18334 5' -63.1 NC_004681.1 + 18427 0.67 0.359874
Target:  5'- aGcCCGCCaCCGCCACCGgaCGAAccGGAa -3'
miRNA:   3'- gC-GGCGGcGGUGGUGGCg-GCUU--CCUc -5'
18334 5' -63.1 NC_004681.1 + 51155 0.67 0.355155
Target:  5'- gGCCGUCGaggaggucauaacucUCGCCGUCGCCGAGGGcGa -3'
miRNA:   3'- gCGGCGGC---------------GGUGGUGGCGGCUUCCuC- -5'
18334 5' -63.1 NC_004681.1 + 67176 0.67 0.352034
Target:  5'- uGuCCGUCGCauCGCCACCGa-GAAGGAa -3'
miRNA:   3'- gC-GGCGGCG--GUGGUGGCggCUUCCUc -5'
18334 5' -63.1 NC_004681.1 + 9089 0.67 0.352034
Target:  5'- gGCCGCguCGUCACCGgCGCCGcuGGc- -3'
miRNA:   3'- gCGGCG--GCGGUGGUgGCGGCuuCCuc -5'
18334 5' -63.1 NC_004681.1 + 9018 0.67 0.352034
Target:  5'- gGCCGUugaCGCCGggguacCCGCCGCCagccAGGAGc -3'
miRNA:   3'- gCGGCG---GCGGU------GGUGGCGGcu--UCCUC- -5'
18334 5' -63.1 NC_004681.1 + 27898 0.67 0.352034
Target:  5'- gCGCCGCCGCgC-CCAUCuCCaGAAGuGAGc -3'
miRNA:   3'- -GCGGCGGCG-GuGGUGGcGG-CUUC-CUC- -5'
18334 5' -63.1 NC_004681.1 + 41558 0.67 0.351256
Target:  5'- uCGCgGCCGCCaugcagcGCCACC-CCGcAGGcAGc -3'
miRNA:   3'- -GCGgCGGCGG-------UGGUGGcGGCuUCC-UC- -5'
18334 5' -63.1 NC_004681.1 + 32544 0.68 0.336719
Target:  5'- gGCCGCUGgCAUCuucgaCGCCcuGAAGGGGg -3'
miRNA:   3'- gCGGCGGCgGUGGug---GCGG--CUUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 30860 0.68 0.336719
Target:  5'- gGCaCGCCGcCCGCCGacCCGCUGGAGc-- -3'
miRNA:   3'- gCG-GCGGC-GGUGGU--GGCGGCUUCcuc -5'
18334 5' -63.1 NC_004681.1 + 28031 0.68 0.329246
Target:  5'- uGCCacaGCCGUUGCCguGCCGCCGAGGc-- -3'
miRNA:   3'- gCGG---CGGCGGUGG--UGGCGGCUUCcuc -5'
18334 5' -63.1 NC_004681.1 + 27778 0.68 0.328505
Target:  5'- gCGCCaCCaCCACCACCGCCGccgccguaucgguAAccGGAGu -3'
miRNA:   3'- -GCGGcGGcGGUGGUGGCGGC-------------UU--CCUC- -5'
18334 5' -63.1 NC_004681.1 + 26356 0.68 0.312525
Target:  5'- uGCCGCCgaggaguccgucauGCC-CCACCGCgu-AGGGGg -3'
miRNA:   3'- gCGGCGG--------------CGGuGGUGGCGgcuUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 6354 0.68 0.300585
Target:  5'- gCGCUGCagcccuugggCGCCACgcccgauggCGCUGUCGAGGGGGa -3'
miRNA:   3'- -GCGGCG----------GCGGUG---------GUGGCGGCUUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.