miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18336 3' -52.6 NC_004681.1 + 54406 0.67 0.874901
Target:  5'- gUCGAugacGACGGaugugccgcucuuGAGGUGGGCGAgGACc- -3'
miRNA:   3'- -AGCU----CUGCU-------------CUUCAUCCGCUgCUGua -5'
18336 3' -52.6 NC_004681.1 + 12451 0.67 0.867823
Target:  5'- gCGAGACGGu--GUAGGUGAagGGCGUg -3'
miRNA:   3'- aGCUCUGCUcuuCAUCCGCUg-CUGUA- -5'
18336 3' -52.6 NC_004681.1 + 7193 0.67 0.858079
Target:  5'- aCGAGAagguacuCGAGAAGgcGGCcggugccgguaacGGCGACAc -3'
miRNA:   3'- aGCUCU-------GCUCUUCauCCG-------------CUGCUGUa -5'
18336 3' -52.6 NC_004681.1 + 48065 0.67 0.851396
Target:  5'- gUCGAcGCGccGGAAGUAGGCGuagaucggaugGCGACu- -3'
miRNA:   3'- -AGCUcUGC--UCUUCAUCCGC-----------UGCUGua -5'
18336 3' -52.6 NC_004681.1 + 41980 0.67 0.851396
Target:  5'- gCGGGACaGGuugacaccugcGAGGUAGGCGugGgACAg -3'
miRNA:   3'- aGCUCUG-CU-----------CUUCAUCCGCugC-UGUa -5'
18336 3' -52.6 NC_004681.1 + 61219 0.67 0.851396
Target:  5'- ---cGACGGuGAAGUuGGCGACGGCc- -3'
miRNA:   3'- agcuCUGCU-CUUCAuCCGCUGCUGua -5'
18336 3' -52.6 NC_004681.1 + 36382 0.68 0.842836
Target:  5'- aCGGGGCGAacggcGGGUGGGUGGCG-CAc -3'
miRNA:   3'- aGCUCUGCUc----UUCAUCCGCUGCuGUa -5'
18336 3' -52.6 NC_004681.1 + 63275 0.68 0.842835
Target:  5'- aCGAGACG-GAAGaaGGGCcGCGAUAUc -3'
miRNA:   3'- aGCUCUGCuCUUCa-UCCGcUGCUGUA- -5'
18336 3' -52.6 NC_004681.1 + 53814 0.68 0.834056
Target:  5'- -gGAuGGCGAcGAGGUcGGCGACGGuCAUg -3'
miRNA:   3'- agCU-CUGCU-CUUCAuCCGCUGCU-GUA- -5'
18336 3' -52.6 NC_004681.1 + 63132 0.68 0.834055
Target:  5'- -aGAGAUcgggGAGggGUGGGUcugcGACGACu- -3'
miRNA:   3'- agCUCUG----CUCuuCAUCCG----CUGCUGua -5'
18336 3' -52.6 NC_004681.1 + 44703 0.68 0.825065
Target:  5'- gCGAgcagGACGGGGugAGUAGuGCGGCGGCc- -3'
miRNA:   3'- aGCU----CUGCUCU--UCAUC-CGCUGCUGua -5'
18336 3' -52.6 NC_004681.1 + 19624 0.68 0.825065
Target:  5'- gUCGAugacGGCGAG-GGUGGGCaagccuggGACGGCAg -3'
miRNA:   3'- -AGCU----CUGCUCuUCAUCCG--------CUGCUGUa -5'
18336 3' -52.6 NC_004681.1 + 2428 0.69 0.787187
Target:  5'- gCGGcACGcAGAAGUGGGCGcCGACc- -3'
miRNA:   3'- aGCUcUGC-UCUUCAUCCGCuGCUGua -5'
18336 3' -52.6 NC_004681.1 + 59292 0.69 0.787187
Target:  5'- aCGAGccgccCGGGAGGccguccgugacaUAGGUGGCGACGUa -3'
miRNA:   3'- aGCUCu----GCUCUUC------------AUCCGCUGCUGUA- -5'
18336 3' -52.6 NC_004681.1 + 3778 0.69 0.786204
Target:  5'- uUCGAcaggaucGGCGAGAAcuugaccaucUGGGCGGCGACGUc -3'
miRNA:   3'- -AGCU-------CUGCUCUUc---------AUCCGCUGCUGUA- -5'
18336 3' -52.6 NC_004681.1 + 38481 0.69 0.77729
Target:  5'- uUUGGGGCGGuuuuGggGUGGGUGAUGGuCAUc -3'
miRNA:   3'- -AGCUCUGCU----CuuCAUCCGCUGCU-GUA- -5'
18336 3' -52.6 NC_004681.1 + 18794 0.7 0.71517
Target:  5'- cUCGAuguuGACGAGAGGUccAGGCGGCuGCc- -3'
miRNA:   3'- -AGCU----CUGCUCUUCA--UCCGCUGcUGua -5'
18336 3' -52.6 NC_004681.1 + 36232 0.76 0.392457
Target:  5'- cCGaAGACGAGAAGU-GGCGGCG-CAa -3'
miRNA:   3'- aGC-UCUGCUCUUCAuCCGCUGCuGUa -5'
18336 3' -52.6 NC_004681.1 + 35588 0.78 0.309163
Target:  5'- gCGGGugGucGGAGGaAGGCGACGGCGUa -3'
miRNA:   3'- aGCUCugC--UCUUCaUCCGCUGCUGUA- -5'
18336 3' -52.6 NC_004681.1 + 63412 1.06 0.004342
Target:  5'- aUCGAGACGAGAAGUAGGCGACGACAUc -3'
miRNA:   3'- -AGCUCUGCUCUUCAUCCGCUGCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.