miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18336 5' -53.7 NC_004681.1 + 61352 0.66 0.878876
Target:  5'- aCGAUGacgCGCuGGCCUUUCUggaggcuuUCCGccacguUCUCg -3'
miRNA:   3'- -GCUAUa--GCG-CCGGGAAGA--------AGGC------AGAG- -5'
18336 5' -53.7 NC_004681.1 + 39272 0.66 0.878876
Target:  5'- gCGAgcaucucCGCGGCCCggaugCCgGUCUCg -3'
miRNA:   3'- -GCUaua----GCGCCGGGaagaaGG-CAGAG- -5'
18336 5' -53.7 NC_004681.1 + 50381 0.66 0.871212
Target:  5'- gCGGggaCGUGGCCCUUCUUgCGg--- -3'
miRNA:   3'- -GCUauaGCGCCGGGAAGAAgGCagag -5'
18336 5' -53.7 NC_004681.1 + 8218 0.66 0.863306
Target:  5'- gCGAgcUgGCGGCCCUgggCUUCCa---- -3'
miRNA:   3'- -GCUauAgCGCCGGGAa--GAAGGcagag -5'
18336 5' -53.7 NC_004681.1 + 12337 0.67 0.846801
Target:  5'- cCGGUcUCGCcgaacacGCCCUUCaccuacaCCGUCUCg -3'
miRNA:   3'- -GCUAuAGCGc------CGGGAAGaa-----GGCAGAG- -5'
18336 5' -53.7 NC_004681.1 + 18844 0.67 0.846801
Target:  5'- gCGGUGUcacgCGCGGCCUcgCcgCCGUCg- -3'
miRNA:   3'- -GCUAUA----GCGCCGGGaaGaaGGCAGag -5'
18336 5' -53.7 NC_004681.1 + 60646 0.68 0.772747
Target:  5'- cCGAggcgUGCGGCgugacuacCCUUCggcCCGUCUCg -3'
miRNA:   3'- -GCUaua-GCGCCG--------GGAAGaa-GGCAGAG- -5'
18336 5' -53.7 NC_004681.1 + 38514 0.68 0.761739
Target:  5'- ----cUCGCGGCCCUUCUgggcuucUUCuUCUCc -3'
miRNA:   3'- gcuauAGCGCCGGGAAGA-------AGGcAGAG- -5'
18336 5' -53.7 NC_004681.1 + 12832 0.69 0.700393
Target:  5'- gCGGUAUgggUGUGGUCC-UCagCCGUCUCa -3'
miRNA:   3'- -GCUAUA---GCGCCGGGaAGaaGGCAGAG- -5'
18336 5' -53.7 NC_004681.1 + 63309 0.69 0.700393
Target:  5'- uGAUGUCGUcGCCUa-CUUCuCGUCUCg -3'
miRNA:   3'- gCUAUAGCGcCGGGaaGAAG-GCAGAG- -5'
18336 5' -53.7 NC_004681.1 + 50069 0.7 0.635704
Target:  5'- uGAUGacgaUGCGGCCCUUCUcgggUCCGcgCUUg -3'
miRNA:   3'- gCUAUa---GCGCCGGGAAGA----AGGCa-GAG- -5'
18336 5' -53.7 NC_004681.1 + 62953 0.71 0.61401
Target:  5'- aGcgGUCGCGGUCCUUCUcggCgCG-CUCg -3'
miRNA:   3'- gCuaUAGCGCCGGGAAGAa--G-GCaGAG- -5'
18336 5' -53.7 NC_004681.1 + 63378 1.11 0.001726
Target:  5'- gCGAUAUCGCGGCCCUUCUUCCGUCUCg -3'
miRNA:   3'- -GCUAUAGCGCCGGGAAGAAGGCAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.