miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18338 3' -59.3 NC_004681.1 + 17707 0.67 0.543695
Target:  5'- cGgGGUCGUCCgCGCCCgAGccgccgauACCAcgGCg -3'
miRNA:   3'- -CgCCGGUAGGaGCGGGgUC--------UGGUa-CG- -5'
18338 3' -59.3 NC_004681.1 + 19888 0.67 0.543695
Target:  5'- gGCGGCCGUUCUUagcggaGCCgCAcACCA-GCg -3'
miRNA:   3'- -CGCCGGUAGGAG------CGGgGUcUGGUaCG- -5'
18338 3' -59.3 NC_004681.1 + 69403 0.67 0.53354
Target:  5'- aUGGCC-UCCUCaaguaaCCCAcuGACCAUGUc -3'
miRNA:   3'- cGCCGGuAGGAGcg----GGGU--CUGGUACG- -5'
18338 3' -59.3 NC_004681.1 + 20131 0.67 0.523454
Target:  5'- cGCGGCCA-CC-CGUCCUGGuCUccGCg -3'
miRNA:   3'- -CGCCGGUaGGaGCGGGGUCuGGuaCG- -5'
18338 3' -59.3 NC_004681.1 + 61310 0.67 0.513441
Target:  5'- uCGGCgG-CgUCGCgCCAGAUgGUGCa -3'
miRNA:   3'- cGCCGgUaGgAGCGgGGUCUGgUACG- -5'
18338 3' -59.3 NC_004681.1 + 6607 0.67 0.513441
Target:  5'- cGCGGCUcgGUCUUC-CCCgAGuCCGUGg -3'
miRNA:   3'- -CGCCGG--UAGGAGcGGGgUCuGGUACg -5'
18338 3' -59.3 NC_004681.1 + 18106 0.67 0.513441
Target:  5'- cCGG-CAUCggCGCCCCcGGCCAgGCa -3'
miRNA:   3'- cGCCgGUAGgaGCGGGGuCUGGUaCG- -5'
18338 3' -59.3 NC_004681.1 + 9951 0.67 0.503508
Target:  5'- uGCGGUgggccgguuCGUCUUCGCCUUGcGGCCGcUGCg -3'
miRNA:   3'- -CGCCG---------GUAGGAGCGGGGU-CUGGU-ACG- -5'
18338 3' -59.3 NC_004681.1 + 36808 0.67 0.503508
Target:  5'- -aGGCaGUCCucuuugUCGCCgCGGGCCGUGg -3'
miRNA:   3'- cgCCGgUAGG------AGCGGgGUCUGGUACg -5'
18338 3' -59.3 NC_004681.1 + 16153 0.67 0.502519
Target:  5'- gGCGGCCAUCCcgUCGCucaucgcgcuguCCUcGGCCAUcuucaugGCa -3'
miRNA:   3'- -CGCCGGUAGG--AGCG------------GGGuCUGGUA-------CG- -5'
18338 3' -59.3 NC_004681.1 + 30673 0.67 0.502519
Target:  5'- cGCGGUCAagCUCGCCuuCCAucacggcccugguGGCgGUGCg -3'
miRNA:   3'- -CGCCGGUagGAGCGG--GGU-------------CUGgUACG- -5'
18338 3' -59.3 NC_004681.1 + 18373 0.68 0.493659
Target:  5'- uGCGGCCGUgC-CGCgCCCGGAgu-UGCc -3'
miRNA:   3'- -CGCCGGUAgGaGCG-GGGUCUgguACG- -5'
18338 3' -59.3 NC_004681.1 + 54959 0.68 0.483899
Target:  5'- cGCGGUCGUCCUUGgCgUCAG-CCGgucGCa -3'
miRNA:   3'- -CGCCGGUAGGAGC-GgGGUCuGGUa--CG- -5'
18338 3' -59.3 NC_004681.1 + 23864 0.68 0.478088
Target:  5'- aGCGGCCugacgGacacgauugacgacaUCCgcggaCGCaUCCAGGCCAUGCu -3'
miRNA:   3'- -CGCCGG-----U---------------AGGa----GCG-GGGUCUGGUACG- -5'
18338 3' -59.3 NC_004681.1 + 20047 0.68 0.474233
Target:  5'- gGUGGCCGcgcuaCCUCuGCUaCGGACCcgGCa -3'
miRNA:   3'- -CGCCGGUa----GGAG-CGGgGUCUGGuaCG- -5'
18338 3' -59.3 NC_004681.1 + 38652 0.68 0.455198
Target:  5'- uGgGGCCuucugCCUCGCaCCCGcucuGACCA-GCc -3'
miRNA:   3'- -CgCCGGua---GGAGCG-GGGU----CUGGUaCG- -5'
18338 3' -59.3 NC_004681.1 + 1103 0.68 0.455198
Target:  5'- -aGGCCAUCUacgagCGCCUCaAGGCCAUc- -3'
miRNA:   3'- cgCCGGUAGGa----GCGGGG-UCUGGUAcg -5'
18338 3' -59.3 NC_004681.1 + 49681 0.68 0.452378
Target:  5'- uUGGCCcgCCUgaugcagucguuggUGCCUCGGGCC-UGCc -3'
miRNA:   3'- cGCCGGuaGGA--------------GCGGGGUCUGGuACG- -5'
18338 3' -59.3 NC_004681.1 + 75424 0.68 0.444905
Target:  5'- cGCGGCCGUaCUCGCggcgcagCCCAcguGCCuAUGCg -3'
miRNA:   3'- -CGCCGGUAgGAGCG-------GGGUc--UGG-UACG- -5'
18338 3' -59.3 NC_004681.1 + 11858 0.69 0.436583
Target:  5'- aGCGGCCAccggggaagUCCUCGCUCaGGAggGUGUc -3'
miRNA:   3'- -CGCCGGU---------AGGAGCGGGgUCUggUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.