miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18340 3' -50.7 NC_004681.1 + 3663 0.66 0.966973
Target:  5'- gUCGCCGcCcagaUGGUCAAGUUcucGCCGAUc -3'
miRNA:   3'- -AGUGGCaGa---ACUAGUUCAGc--UGGCUG- -5'
18340 3' -50.7 NC_004681.1 + 15711 0.66 0.963466
Target:  5'- cCAUCGUCUUcgcGGUCGucuuGUCGucGCCGAa -3'
miRNA:   3'- aGUGGCAGAA---CUAGUu---CAGC--UGGCUg -5'
18340 3' -50.7 NC_004681.1 + 63040 0.66 0.959707
Target:  5'- cCACCGcCgaaggaGAUgGAGUCGACC-ACa -3'
miRNA:   3'- aGUGGCaGaa----CUAgUUCAGCUGGcUG- -5'
18340 3' -50.7 NC_004681.1 + 25432 0.66 0.959707
Target:  5'- aUCACCGUCUcgGGagGGGUCGGuggcguggugUCGAUa -3'
miRNA:   3'- -AGUGGCAGAa-CUagUUCAGCU----------GGCUG- -5'
18340 3' -50.7 NC_004681.1 + 51274 0.66 0.955691
Target:  5'- cCACCGUCUaccaGAUCA--UC-ACCGACc -3'
miRNA:   3'- aGUGGCAGAa---CUAGUucAGcUGGCUG- -5'
18340 3' -50.7 NC_004681.1 + 65072 0.66 0.955691
Target:  5'- aUCcCCGcUCgggUGGUCGccgaGGUCGGCCuGGCa -3'
miRNA:   3'- -AGuGGC-AGa--ACUAGU----UCAGCUGG-CUG- -5'
18340 3' -50.7 NC_004681.1 + 21323 0.67 0.951411
Target:  5'- cCAUCGUCgugGAcguGGUCGACCGcaGCg -3'
miRNA:   3'- aGUGGCAGaa-CUaguUCAGCUGGC--UG- -5'
18340 3' -50.7 NC_004681.1 + 20926 0.67 0.946862
Target:  5'- uUCACCGUCcuucaUUGcauaAUCGAauguGUCGACcCGACc -3'
miRNA:   3'- -AGUGGCAG-----AAC----UAGUU----CAGCUG-GCUG- -5'
18340 3' -50.7 NC_004681.1 + 7445 0.67 0.936946
Target:  5'- gCAgCGUCgagGAUCugacCGACCGACu -3'
miRNA:   3'- aGUgGCAGaa-CUAGuucaGCUGGCUG- -5'
18340 3' -50.7 NC_004681.1 + 59688 0.67 0.931573
Target:  5'- cCAuCCGcCUgagUGAUCAGGUCGACUa-- -3'
miRNA:   3'- aGU-GGCaGA---ACUAGUUCAGCUGGcug -5'
18340 3' -50.7 NC_004681.1 + 31746 0.67 0.931573
Target:  5'- gUUGCCGUCUacguUCAAGUCGauGCCGcACc -3'
miRNA:   3'- -AGUGGCAGAacu-AGUUCAGC--UGGC-UG- -5'
18340 3' -50.7 NC_004681.1 + 52332 0.67 0.931573
Target:  5'- cCACCGgccaggUUGGUCAGGUCGGggaUGGCg -3'
miRNA:   3'- aGUGGCag----AACUAGUUCAGCUg--GCUG- -5'
18340 3' -50.7 NC_004681.1 + 22291 0.68 0.919992
Target:  5'- uUCcCCGUCccaGAUCAGGUCGuuGCCGuCc -3'
miRNA:   3'- -AGuGGCAGaa-CUAGUUCAGC--UGGCuG- -5'
18340 3' -50.7 NC_004681.1 + 41122 0.68 0.9073
Target:  5'- gUCACCGUgCUUGcaccacugcGUCAuuGUCGACCcACu -3'
miRNA:   3'- -AGUGGCA-GAAC---------UAGUu-CAGCUGGcUG- -5'
18340 3' -50.7 NC_004681.1 + 24926 0.68 0.9073
Target:  5'- cCGCCGaCgccGAUgAGGUCGACCG-Cg -3'
miRNA:   3'- aGUGGCaGaa-CUAgUUCAGCUGGCuG- -5'
18340 3' -50.7 NC_004681.1 + 24313 0.68 0.9073
Target:  5'- gCuCCGaCUUGAUCAggccgcGGUUGAUCGGCu -3'
miRNA:   3'- aGuGGCaGAACUAGU------UCAGCUGGCUG- -5'
18340 3' -50.7 NC_004681.1 + 29695 0.69 0.886217
Target:  5'- uUCACCcug--GcgUAGGUCGACCGGCc -3'
miRNA:   3'- -AGUGGcagaaCuaGUUCAGCUGGCUG- -5'
18340 3' -50.7 NC_004681.1 + 54764 0.7 0.828187
Target:  5'- gUCAUCGUCaUG-UCGGGUCGugaCGACa -3'
miRNA:   3'- -AGUGGCAGaACuAGUUCAGCug-GCUG- -5'
18340 3' -50.7 NC_004681.1 + 45590 0.71 0.799062
Target:  5'- gUCGCCGUCguacucgUUGAUCAGGgUGGCCaGCu -3'
miRNA:   3'- -AGUGGCAG-------AACUAGUUCaGCUGGcUG- -5'
18340 3' -50.7 NC_004681.1 + 31748 0.72 0.707224
Target:  5'- gCGCCGaCccGAUCAAGUacccaGACCGGCa -3'
miRNA:   3'- aGUGGCaGaaCUAGUUCAg----CUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.