miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18340 5' -63.6 NC_004681.1 + 61851 0.66 0.450561
Target:  5'- -uGGCGGCCGcGGUcugguggcgcgCGAGggcggccuccuuGCGGACGGa -3'
miRNA:   3'- ccCCGCCGGCuCCG-----------GCUC------------UGCCUGCU- -5'
18340 5' -63.6 NC_004681.1 + 14492 0.66 0.450561
Target:  5'- aGGGCGcGCUGGuGGCCGGuGCuGGcGCGAg -3'
miRNA:   3'- cCCCGC-CGGCU-CCGGCUcUG-CC-UGCU- -5'
18340 5' -63.6 NC_004681.1 + 13220 0.66 0.441622
Target:  5'- aGGGCGGUgGcGGGCagCGGGGCGGguguuaACGGa -3'
miRNA:   3'- cCCCGCCGgC-UCCG--GCUCUGCC------UGCU- -5'
18340 5' -63.6 NC_004681.1 + 6568 0.66 0.432784
Target:  5'- ---uUGGUCGGGGauagucccggcaCCGAGGCGGGCGGa -3'
miRNA:   3'- ccccGCCGGCUCC------------GGCUCUGCCUGCU- -5'
18340 5' -63.6 NC_004681.1 + 9086 0.66 0.432784
Target:  5'- -cGGUGGCCGAGGUggcgccgacagCGAGGaGGcCGAg -3'
miRNA:   3'- ccCCGCCGGCUCCG-----------GCUCUgCCuGCU- -5'
18340 5' -63.6 NC_004681.1 + 475 0.66 0.415421
Target:  5'- uGGGGaGGCgCcuGGCCGAGAugcUGGGCGu -3'
miRNA:   3'- -CCCCgCCG-GcuCCGGCUCU---GCCUGCu -5'
18340 5' -63.6 NC_004681.1 + 39570 0.66 0.406902
Target:  5'- --cGCGGCCGAGGagcuCGcauCGGACGAa -3'
miRNA:   3'- cccCGCCGGCUCCg---GCucuGCCUGCU- -5'
18340 5' -63.6 NC_004681.1 + 19606 0.66 0.406902
Target:  5'- uGGGCGcGCUGcggcguGGUCGAuGACGG-CGAg -3'
miRNA:   3'- cCCCGC-CGGCu-----CCGGCU-CUGCCuGCU- -5'
18340 5' -63.6 NC_004681.1 + 69227 0.66 0.406902
Target:  5'- cGGuaGGCgaggGAGGCCaGGGcGCGGGCGAg -3'
miRNA:   3'- cCCcgCCGg---CUCCGG-CUC-UGCCUGCU- -5'
18340 5' -63.6 NC_004681.1 + 7211 0.66 0.398492
Target:  5'- -aGGCGGCCGGuGCCGGuaACGG-CGAc -3'
miRNA:   3'- ccCCGCCGGCUcCGGCUc-UGCCuGCU- -5'
18340 5' -63.6 NC_004681.1 + 54669 0.66 0.398492
Target:  5'- gGGGGCagcuGGCUGAuGGuucccaCCG-GGCGGAUGAu -3'
miRNA:   3'- -CCCCG----CCGGCU-CC------GGCuCUGCCUGCU- -5'
18340 5' -63.6 NC_004681.1 + 7981 0.66 0.398492
Target:  5'- aGGcGGCGGCgGucucaucgacGGGCgCGGGcucuucgucaGCGGGCGAu -3'
miRNA:   3'- -CC-CCGCCGgC----------UCCG-GCUC----------UGCCUGCU- -5'
18340 5' -63.6 NC_004681.1 + 2967 0.67 0.390196
Target:  5'- gGGGGCuucgucacGGUCGAGcGCCucgGGGACGG-UGAc -3'
miRNA:   3'- -CCCCG--------CCGGCUC-CGG---CUCUGCCuGCU- -5'
18340 5' -63.6 NC_004681.1 + 45092 0.67 0.373944
Target:  5'- cGGGCGacGCCcacGAGGCCGAGGaugcagcaGGGCu- -3'
miRNA:   3'- cCCCGC--CGG---CUCCGGCUCUg-------CCUGcu -5'
18340 5' -63.6 NC_004681.1 + 61417 0.67 0.358937
Target:  5'- gGGGGCGGCagcuccucguucaagGAaGCCGAcgccaacaaGugGGGCGAu -3'
miRNA:   3'- -CCCCGCCGg--------------CUcCGGCU---------CugCCUGCU- -5'
18340 5' -63.6 NC_004681.1 + 30341 0.67 0.358158
Target:  5'- -cGGCcGCCGccGCUGuGGCGGGCGAu -3'
miRNA:   3'- ccCCGcCGGCucCGGCuCUGCCUGCU- -5'
18340 5' -63.6 NC_004681.1 + 1560 0.67 0.358158
Target:  5'- uGGGCGGCgGGGGa-GAGGaaGACGGc -3'
miRNA:   3'- cCCCGCCGgCUCCggCUCUgcCUGCU- -5'
18340 5' -63.6 NC_004681.1 + 18197 0.67 0.358158
Target:  5'- gGGGGCGccgauGCCGGGgauGCCGAuGcccauacccGCGGGCGGg -3'
miRNA:   3'- -CCCCGC-----CGGCUC---CGGCU-C---------UGCCUGCU- -5'
18340 5' -63.6 NC_004681.1 + 7372 0.67 0.358158
Target:  5'- -aGGCGGCgcacuCGGcGCCGAGGUGGACGGc -3'
miRNA:   3'- ccCCGCCG-----GCUcCGGCUCUGCCUGCU- -5'
18340 5' -63.6 NC_004681.1 + 38214 0.68 0.335368
Target:  5'- uGGGGCGGCCGAagacgucCCGcGGCGG-CGc -3'
miRNA:   3'- -CCCCGCCGGCUcc-----GGCuCUGCCuGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.