miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18341 5' -56.7 NC_004681.1 + 9837 0.66 0.730489
Target:  5'- cCGCAgcGGCCgcaaggcgaagacgaACCggcccaccgcagGCGUGGAGACGa- -3'
miRNA:   3'- -GCGUaaCCGG---------------UGG------------CGCACCUCUGUgu -5'
18341 5' -56.7 NC_004681.1 + 56032 0.66 0.726371
Target:  5'- cCGCAUc-GCCuucaC-CGUGGAGACGCAg -3'
miRNA:   3'- -GCGUAacCGGug--GcGCACCUCUGUGU- -5'
18341 5' -56.7 NC_004681.1 + 61660 0.66 0.726371
Target:  5'- gCGCAgaaGCCGCCGCcGcGGAGGC-CGc -3'
miRNA:   3'- -GCGUaacCGGUGGCG-CaCCUCUGuGU- -5'
18341 5' -56.7 NC_004681.1 + 25704 0.66 0.716017
Target:  5'- gGCAUggGGCCuuCG-GUGGGGACGa- -3'
miRNA:   3'- gCGUAa-CCGGugGCgCACCUCUGUgu -5'
18341 5' -56.7 NC_004681.1 + 37201 0.66 0.716017
Target:  5'- aCGCAUUcgacagGGCUGCgCGUGUGGAucGGCugGu -3'
miRNA:   3'- -GCGUAA------CCGGUG-GCGCACCU--CUGugU- -5'
18341 5' -56.7 NC_004681.1 + 452 0.66 0.716017
Target:  5'- gGCGUccaaccUGGCCGaguUCGUGgGGAGGCGCc -3'
miRNA:   3'- gCGUA------ACCGGU---GGCGCaCCUCUGUGu -5'
18341 5' -56.7 NC_004681.1 + 30347 0.66 0.705585
Target:  5'- cCGUAccGGCCGCCGCcgcuGUGGcGGGCGa- -3'
miRNA:   3'- -GCGUaaCCGGUGGCG----CACC-UCUGUgu -5'
18341 5' -56.7 NC_004681.1 + 73636 0.66 0.695084
Target:  5'- aCGCGUauacgcgcgauaUGGag--CGCGUGGAGACGCu -3'
miRNA:   3'- -GCGUA------------ACCggugGCGCACCUCUGUGu -5'
18341 5' -56.7 NC_004681.1 + 23774 0.67 0.663279
Target:  5'- cCGCGgaGGCgGgCGCGUaGGAGGC-CAg -3'
miRNA:   3'- -GCGUaaCCGgUgGCGCA-CCUCUGuGU- -5'
18341 5' -56.7 NC_004681.1 + 12873 0.67 0.652609
Target:  5'- gGCAcuacGGCCGCUGCG-GGuGAcCACAc -3'
miRNA:   3'- gCGUaa--CCGGUGGCGCaCCuCU-GUGU- -5'
18341 5' -56.7 NC_004681.1 + 15882 0.67 0.652609
Target:  5'- aGCc-UGGCgGCCGCGUGG-GuCACc -3'
miRNA:   3'- gCGuaACCGgUGGCGCACCuCuGUGu -5'
18341 5' -56.7 NC_004681.1 + 19915 0.67 0.641921
Target:  5'- gGCAUgaaGGCCACCGCG-GGccugcucaACACGc -3'
miRNA:   3'- gCGUAa--CCGGUGGCGCaCCuc------UGUGU- -5'
18341 5' -56.7 NC_004681.1 + 41131 0.67 0.641921
Target:  5'- uCGCAUgggUGGCUacccuGCCGCGaUGGAuGGCAa- -3'
miRNA:   3'- -GCGUA---ACCGG-----UGGCGC-ACCU-CUGUgu -5'
18341 5' -56.7 NC_004681.1 + 48760 0.68 0.609843
Target:  5'- cCGCcagGGuucCCGCCaGCGUGGAGGCGg- -3'
miRNA:   3'- -GCGuaaCC---GGUGG-CGCACCUCUGUgu -5'
18341 5' -56.7 NC_004681.1 + 45704 0.68 0.599176
Target:  5'- gGUAcccUUGGCCGaCGCGgaGGAGGCACc -3'
miRNA:   3'- gCGU---AACCGGUgGCGCa-CCUCUGUGu -5'
18341 5' -56.7 NC_004681.1 + 32222 0.68 0.599176
Target:  5'- gGCGUgGGCCGCCGCGgugaccgcuuccUGGAugccgGugACGa -3'
miRNA:   3'- gCGUAaCCGGUGGCGC------------ACCU-----CugUGU- -5'
18341 5' -56.7 NC_004681.1 + 61857 0.68 0.599176
Target:  5'- gGCcgaUGGCgGCCGCGgucUGGuGGCGCGc -3'
miRNA:   3'- gCGua-ACCGgUGGCGC---ACCuCUGUGU- -5'
18341 5' -56.7 NC_004681.1 + 70409 0.68 0.567364
Target:  5'- uGuCAgagGGCUACgCGCGcgagcaUGGAGACACGg -3'
miRNA:   3'- gC-GUaa-CCGGUG-GCGC------ACCUCUGUGU- -5'
18341 5' -56.7 NC_004681.1 + 35476 0.69 0.535998
Target:  5'- -----cGGCCACCG-GUGGcuuGGACGCAg -3'
miRNA:   3'- gcguaaCCGGUGGCgCACC---UCUGUGU- -5'
18341 5' -56.7 NC_004681.1 + 46396 0.69 0.535998
Target:  5'- uGCAggaUGGCUGcCCGcCGUGGAcguaGACGCAg -3'
miRNA:   3'- gCGUa--ACCGGU-GGC-GCACCU----CUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.