Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18342 | 3' | -58.5 | NC_004681.1 | + | 67054 | 1.09 | 0.000711 |
Target: 5'- cGAUGUCGCCUUCGAGCUCGGCGCGCGg -3' miRNA: 3'- -CUACAGCGGAAGCUCGAGCCGCGCGC- -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 13168 | 0.76 | 0.181599 |
Target: 5'- aGcgG-CGgCUUCGAGCUCGGCGaUGCGa -3' miRNA: 3'- -CuaCaGCgGAAGCUCGAGCCGC-GCGC- -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 27035 | 0.75 | 0.21177 |
Target: 5'- cGcgGUCGCCUUCGAGUccguggUCGGCGU-CGa -3' miRNA: 3'- -CuaCAGCGGAAGCUCG------AGCCGCGcGC- -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 54152 | 0.72 | 0.30624 |
Target: 5'- uGUGcCGCgCUUCuaGGGCUCucgGGCGCGCGg -3' miRNA: 3'- cUACaGCG-GAAG--CUCGAG---CCGCGCGC- -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 51335 | 0.72 | 0.30624 |
Target: 5'- --cGUCGCCgcgGAGCUCGGCaaGCa -3' miRNA: 3'- cuaCAGCGGaagCUCGAGCCGcgCGc -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 2524 | 0.71 | 0.344205 |
Target: 5'- ---aUCGCCUggaUUGAGCUCG-CGCGCa -3' miRNA: 3'- cuacAGCGGA---AGCUCGAGCcGCGCGc -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 57858 | 0.7 | 0.376935 |
Target: 5'- cGGUGUCGCCUga-AGCUCGGCGa--- -3' miRNA: 3'- -CUACAGCGGAagcUCGAGCCGCgcgc -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 3042 | 0.7 | 0.411698 |
Target: 5'- ---cUCGCUggUGAaCUCGGCGCGCGu -3' miRNA: 3'- cuacAGCGGaaGCUcGAGCCGCGCGC- -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 14475 | 0.7 | 0.420694 |
Target: 5'- --cGcCGCCUccgcCGAGCagGGCGCGCu -3' miRNA: 3'- cuaCaGCGGAa---GCUCGagCCGCGCGc -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 35490 | 0.7 | 0.424325 |
Target: 5'- --cGUCGCCUUCcuccgaccacccgcaGAuGCaguacUCGGCGCGCa -3' miRNA: 3'- cuaCAGCGGAAG---------------CU-CG-----AGCCGCGCGc -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 65024 | 0.69 | 0.448378 |
Target: 5'- --cGUCGCCaccUCGuGCUCcaGGCGgGCGc -3' miRNA: 3'- cuaCAGCGGa--AGCuCGAG--CCGCgCGC- -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 56774 | 0.69 | 0.47704 |
Target: 5'- cGAUGaaGCCUUCGGGgaUGaGCGCaGCGa -3' miRNA: 3'- -CUACagCGGAAGCUCgaGC-CGCG-CGC- -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 24825 | 0.69 | 0.47704 |
Target: 5'- cGcgGUCGaCCUcaUCG-GCgUCGGCGgCGCGg -3' miRNA: 3'- -CuaCAGC-GGA--AGCuCG-AGCCGC-GCGC- -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 40669 | 0.68 | 0.496644 |
Target: 5'- cAUGUCGCCgUUUGc-CUCGGCGaCGCu -3' miRNA: 3'- cUACAGCGG-AAGCucGAGCCGC-GCGc -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 39970 | 0.67 | 0.551228 |
Target: 5'- ----cCGCCUggUCGAGgaagcgcugcucgaaCUUGGCGCGCGc -3' miRNA: 3'- cuacaGCGGA--AGCUC---------------GAGCCGCGCGC- -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 30141 | 0.67 | 0.557416 |
Target: 5'- -----gGCCUgugggUCGGGCUCaGGCGgCGCGg -3' miRNA: 3'- cuacagCGGA-----AGCUCGAG-CCGC-GCGC- -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 10297 | 0.67 | 0.578175 |
Target: 5'- --cGUCGCCaUUCGc-CUC-GCGCGCGa -3' miRNA: 3'- cuaCAGCGG-AAGCucGAGcCGCGCGC- -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 62953 | 0.67 | 0.599098 |
Target: 5'- aGcgGUCGCggUCcuuCUCGGCGCGCu -3' miRNA: 3'- -CuaCAGCGgaAGcucGAGCCGCGCGc -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 75526 | 0.67 | 0.599098 |
Target: 5'- cGUGggcugCGCCg-CGAGUaCGGCcGCGCGg -3' miRNA: 3'- cUACa----GCGGaaGCUCGaGCCG-CGCGC- -5' |
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18342 | 3' | -58.5 | NC_004681.1 | + | 64752 | 0.67 | 0.599098 |
Target: 5'- cGAUGacauggcgaaUCGCCUUCGGGC--GGUGgGCa -3' miRNA: 3'- -CUAC----------AGCGGAAGCUCGagCCGCgCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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