miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18342 5' -54.5 NC_004681.1 + 44410 0.67 0.782744
Target:  5'- cUCGCCACAGGGUguGgGACGcGCGc- -3'
miRNA:   3'- cGGCGGUGUCUCAguUgCUGC-UGCua -5'
18342 5' -54.5 NC_004681.1 + 20559 0.67 0.782744
Target:  5'- uUCGCaGCGGAGUUAG-GGCGGCGAc -3'
miRNA:   3'- cGGCGgUGUCUCAGUUgCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 27762 0.67 0.781769
Target:  5'- cGCCGCCGCcguaucgguaaccGGAGUUggauCGGCGACc-- -3'
miRNA:   3'- -CGGCGGUG-------------UCUCAGuu--GCUGCUGcua -5'
18342 5' -54.5 NC_004681.1 + 27138 0.67 0.772929
Target:  5'- cGCCGaCCACGGAcUCGAaGGCGACc-- -3'
miRNA:   3'- -CGGC-GGUGUCUcAGUUgCUGCUGcua -5'
18342 5' -54.5 NC_004681.1 + 72410 0.67 0.772929
Target:  5'- -gUGUCACAugguGGGaCGACGACGACGAc -3'
miRNA:   3'- cgGCGGUGU----CUCaGUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 22361 0.67 0.762975
Target:  5'- cGCCGCCACgcGGAGUgAGC-ACGA-GAg -3'
miRNA:   3'- -CGGCGGUG--UCUCAgUUGcUGCUgCUa -5'
18342 5' -54.5 NC_004681.1 + 51131 0.67 0.762975
Target:  5'- cGCCGUCGCcGAGg--GCGAUGACGc- -3'
miRNA:   3'- -CGGCGGUGuCUCaguUGCUGCUGCua -5'
18342 5' -54.5 NC_004681.1 + 37045 0.67 0.762975
Target:  5'- gGCCGCCGCguGGAGUCGccuACugGAUGACu-- -3'
miRNA:   3'- -CGGCGGUG--UCUCAGU---UG--CUGCUGcua -5'
18342 5' -54.5 NC_004681.1 + 40160 0.68 0.742687
Target:  5'- -aCGCCGCAGA-UCGA-GGCGAUGAg -3'
miRNA:   3'- cgGCGGUGUCUcAGUUgCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 9309 0.68 0.742687
Target:  5'- -aCGCCuACGGcaacccGGUCAACGGCGGCa-- -3'
miRNA:   3'- cgGCGG-UGUC------UCAGUUGCUGCUGcua -5'
18342 5' -54.5 NC_004681.1 + 61670 0.68 0.742687
Target:  5'- cGCCGCCGCGGAGgc--CGcCGcCGAg -3'
miRNA:   3'- -CGGCGGUGUCUCaguuGCuGCuGCUa -5'
18342 5' -54.5 NC_004681.1 + 2018 0.68 0.732377
Target:  5'- gGCCGCgGcCAGguGGUCGugGAgGGCGGc -3'
miRNA:   3'- -CGGCGgU-GUC--UCAGUugCUgCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 16349 0.68 0.732377
Target:  5'- uCCGCUGCGGcGGUgGGUGGCGACGAg -3'
miRNA:   3'- cGGCGGUGUC-UCAgUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 61180 0.68 0.732377
Target:  5'- aCCGCagcuCGGGGUCGGCGGucagcgugcCGACGAg -3'
miRNA:   3'- cGGCGgu--GUCUCAGUUGCU---------GCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 17904 0.68 0.72197
Target:  5'- gGCCGCCGCGuuGAuGUCGGCcuGCGugGGc -3'
miRNA:   3'- -CGGCGGUGU--CU-CAGUUGc-UGCugCUa -5'
18342 5' -54.5 NC_004681.1 + 68236 0.68 0.72197
Target:  5'- cGCCGCCACGGucUCAuCGACuACGc- -3'
miRNA:   3'- -CGGCGGUGUCucAGUuGCUGcUGCua -5'
18342 5' -54.5 NC_004681.1 + 60471 0.69 0.690275
Target:  5'- cGCCGCCACcgugcccacgAGAGgcuuacgcgCAACcACGACGGg -3'
miRNA:   3'- -CGGCGGUG----------UCUCa--------GUUGcUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 30245 0.69 0.679588
Target:  5'- cCCGCCACAG---CGGCGGCGGcCGGUa -3'
miRNA:   3'- cGGCGGUGUCucaGUUGCUGCU-GCUA- -5'
18342 5' -54.5 NC_004681.1 + 41562 0.69 0.679588
Target:  5'- gGCCGCCauGCAGcgccaccccgcAGgCAGCGcACGGCGAUg -3'
miRNA:   3'- -CGGCGG--UGUC-----------UCaGUUGC-UGCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 716 0.69 0.678517
Target:  5'- gGCCGaaggCGCGGAGgaaguucUCGACGGCGuCGAUg -3'
miRNA:   3'- -CGGCg---GUGUCUC-------AGUUGCUGCuGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.