miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18343 3' -57.1 NC_004681.1 + 37381 0.66 0.7232
Target:  5'- uGUGCGGauggaUGCCcGCGGCCUUcUUGgCg -3'
miRNA:   3'- -CACGCCa----ACGGcUGUCGGAGuAGCgG- -5'
18343 3' -57.1 NC_004681.1 + 29532 0.66 0.7232
Target:  5'- gGUGUGGacgGCUucCGGCUcgggCAUCGCCg -3'
miRNA:   3'- -CACGCCaa-CGGcuGUCGGa---GUAGCGG- -5'
18343 3' -57.1 NC_004681.1 + 37460 0.66 0.7232
Target:  5'- gGUGCGGaagugcUUGCCGcauugGCAGCCgggAUUGCa -3'
miRNA:   3'- -CACGCC------AACGGC-----UGUCGGag-UAGCGg -5'
18343 3' -57.1 NC_004681.1 + 48865 0.66 0.7232
Target:  5'- --uCGGcaUGCUGACgGGCCUCucgCGCCu -3'
miRNA:   3'- cacGCCa-ACGGCUG-UCGGAGua-GCGG- -5'
18343 3' -57.1 NC_004681.1 + 60357 0.66 0.7232
Target:  5'- -cGUGGUUGCgCGuaAGCCUC-UCGUg -3'
miRNA:   3'- caCGCCAACG-GCugUCGGAGuAGCGg -5'
18343 3' -57.1 NC_004681.1 + 47076 0.66 0.71285
Target:  5'- uGUcCGGUaggccacGCUGugAGCCUuggaCAUCGCCu -3'
miRNA:   3'- -CAcGCCAa------CGGCugUCGGA----GUAGCGG- -5'
18343 3' -57.1 NC_004681.1 + 70418 0.66 0.71285
Target:  5'- -cGCGcgcGCgCGACAGCUgUCAUCGUCu -3'
miRNA:   3'- caCGCcaaCG-GCUGUCGG-AGUAGCGG- -5'
18343 3' -57.1 NC_004681.1 + 25684 0.66 0.71285
Target:  5'- -gGCGGg-GCCaGGCgucGGCCUguacgugaCAUCGCCg -3'
miRNA:   3'- caCGCCaaCGG-CUG---UCGGA--------GUAGCGG- -5'
18343 3' -57.1 NC_004681.1 + 32857 0.66 0.702426
Target:  5'- -aGCGGaUUGCCGACcgGGCCgaaCGagGCg -3'
miRNA:   3'- caCGCC-AACGGCUG--UCGGa--GUagCGg -5'
18343 3' -57.1 NC_004681.1 + 41994 0.66 0.691936
Target:  5'- -cGCGGggGCgaucuCGGcCAGCCUUGUcgaCGCCa -3'
miRNA:   3'- caCGCCaaCG-----GCU-GUCGGAGUA---GCGG- -5'
18343 3' -57.1 NC_004681.1 + 55178 0.66 0.681393
Target:  5'- uUGCGGguaaUGCCGAUcugagucauGGUgUCcuuUCGCCg -3'
miRNA:   3'- cACGCCa---ACGGCUG---------UCGgAGu--AGCGG- -5'
18343 3' -57.1 NC_004681.1 + 48681 0.66 0.671866
Target:  5'- -gGCGGgccagcucccauggGCCGAguuCGGCUUCgaGUCGCCc -3'
miRNA:   3'- caCGCCaa------------CGGCU---GUCGGAG--UAGCGG- -5'
18343 3' -57.1 NC_004681.1 + 56267 0.66 0.670806
Target:  5'- -cGCuGGacuugugGCCGcGgAGCUUCAUCGCCu -3'
miRNA:   3'- caCG-CCaa-----CGGC-UgUCGGAGUAGCGG- -5'
18343 3' -57.1 NC_004681.1 + 13941 0.67 0.660184
Target:  5'- -cGCGGUcuUGgUGACGGaCUUAUCGUCc -3'
miRNA:   3'- caCGCCA--ACgGCUGUCgGAGUAGCGG- -5'
18343 3' -57.1 NC_004681.1 + 2715 0.67 0.660184
Target:  5'- -cGCGGacggcGCCGAa---CUCGUCGCCu -3'
miRNA:   3'- caCGCCaa---CGGCUgucgGAGUAGCGG- -5'
18343 3' -57.1 NC_004681.1 + 55805 0.67 0.648473
Target:  5'- -aGCGGcUGCUGACGGucgaugaCCUCAaggCGCUc -3'
miRNA:   3'- caCGCCaACGGCUGUC-------GGAGUa--GCGG- -5'
18343 3' -57.1 NC_004681.1 + 53570 0.67 0.632478
Target:  5'- gGUGCGGcguucgaugucuucgUUGCCGAgGGCUUCgAUCaGaCCg -3'
miRNA:   3'- -CACGCC---------------AACGGCUgUCGGAG-UAG-C-GG- -5'
18343 3' -57.1 NC_004681.1 + 66070 0.67 0.628211
Target:  5'- -cGCGGcaGCCuucuCGGCCUUcgUGCCg -3'
miRNA:   3'- caCGCCaaCGGcu--GUCGGAGuaGCGG- -5'
18343 3' -57.1 NC_004681.1 + 60285 0.67 0.628211
Target:  5'- -gGCGGgUGCCGAUcaCCUCG-CGCUc -3'
miRNA:   3'- caCGCCaACGGCUGucGGAGUaGCGG- -5'
18343 3' -57.1 NC_004681.1 + 41783 0.67 0.62821
Target:  5'- ---aGGU--UCGACGGCCUUcgCGCCg -3'
miRNA:   3'- cacgCCAacGGCUGUCGGAGuaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.