miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18344 3' -55.7 NC_004681.1 + 26681 0.66 0.806706
Target:  5'- cGGUCaAGGAGUaCG-CCUCGUGCGc -3'
miRNA:   3'- uCCAGcUCCUCAaGCuGGAGUGCGCu -5'
18344 3' -55.7 NC_004681.1 + 54395 0.66 0.778403
Target:  5'- gAGuUCGAGGuGgUCGACgUCaaGCGCGAc -3'
miRNA:   3'- -UCcAGCUCCuCaAGCUGgAG--UGCGCU- -5'
18344 3' -55.7 NC_004681.1 + 25682 0.66 0.768671
Target:  5'- gGGG-CGGGGccAGgcgUCGGCCUgUACGUGAc -3'
miRNA:   3'- -UCCaGCUCC--UCa--AGCUGGA-GUGCGCU- -5'
18344 3' -55.7 NC_004681.1 + 40210 0.66 0.768671
Target:  5'- gGGGUCGuGGAGgagcUUGACggUUGCGCGGg -3'
miRNA:   3'- -UCCAGCuCCUCa---AGCUGg-AGUGCGCU- -5'
18344 3' -55.7 NC_004681.1 + 66968 0.67 0.758808
Target:  5'- aAGGcgacaUCGGGGAcaGUcacgUCGGCCUgCACGCGc -3'
miRNA:   3'- -UCC-----AGCUCCU--CA----AGCUGGA-GUGCGCu -5'
18344 3' -55.7 NC_004681.1 + 3239 0.67 0.748824
Target:  5'- cAGGcccUgGAGGAGggCGAgCCgcugggCGCGCGAu -3'
miRNA:   3'- -UCC---AgCUCCUCaaGCU-GGa-----GUGCGCU- -5'
18344 3' -55.7 NC_004681.1 + 50811 0.67 0.738729
Target:  5'- gGGGUCGGGGAGUUCGuagauguaGCCg--UGCu- -3'
miRNA:   3'- -UCCAGCUCCUCAAGC--------UGGaguGCGcu -5'
18344 3' -55.7 NC_004681.1 + 52501 0.68 0.66583
Target:  5'- uGGG-CGugccuagacGGcGAGUUCGACCUCAC-CGAc -3'
miRNA:   3'- -UCCaGC---------UC-CUCAAGCUGGAGUGcGCU- -5'
18344 3' -55.7 NC_004681.1 + 36901 0.69 0.644587
Target:  5'- aGGGUCaucGGGUcuucUCGAUCUCugGCGAa -3'
miRNA:   3'- -UCCAGcucCUCA----AGCUGGAGugCGCU- -5'
18344 3' -55.7 NC_004681.1 + 46184 0.7 0.591447
Target:  5'- -uGUUGAGGAGcgCGGCUUCGCGgcCGAc -3'
miRNA:   3'- ucCAGCUCCUCaaGCUGGAGUGC--GCU- -5'
18344 3' -55.7 NC_004681.1 + 32270 0.7 0.55988
Target:  5'- cGGGUUGAGcGuGUUcaCGACCUCcuugACGCGGu -3'
miRNA:   3'- -UCCAGCUC-CuCAA--GCUGGAG----UGCGCU- -5'
18344 3' -55.7 NC_004681.1 + 2031 0.75 0.320758
Target:  5'- uGGUCGuGGAGggCGGCCgCACcGCGGa -3'
miRNA:   3'- uCCAGCuCCUCaaGCUGGaGUG-CGCU- -5'
18344 3' -55.7 NC_004681.1 + 67410 1.09 0.001538
Target:  5'- cAGGUCGAGGAGUUCGACCUCACGCGAg -3'
miRNA:   3'- -UCCAGCUCCUCAAGCUGGAGUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.