Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18344 | 5' | -55.9 | NC_004681.1 | + | 33108 | 0.67 | 0.734872 |
Target: 5'- aCCUGUACGCacagaaccucGACGG-GAAgUCuGGCGa -3' miRNA: 3'- gGGGCAUGUG----------CUGCCuCUUgAG-CCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 39897 | 0.68 | 0.724791 |
Target: 5'- gCCCCacgAgGCGugGGAGGcgauggucGCgCGGCGg -3' miRNA: 3'- -GGGGca-UgUGCugCCUCU--------UGaGCCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 48811 | 0.68 | 0.724791 |
Target: 5'- gCUCGUugACcGCGGGcgacucgaagccGAACUCGGCc -3' miRNA: 3'- gGGGCAugUGcUGCCU------------CUUGAGCCGc -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 72232 | 0.68 | 0.714626 |
Target: 5'- -aCCGUccGCGCGGCGGuugauGGACUCcacgauGGCGc -3' miRNA: 3'- ggGGCA--UGUGCUGCCu----CUUGAG------CCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 30432 | 0.68 | 0.714626 |
Target: 5'- aCCCGUAUguguACGGCGGGGcGCUCucGCc -3' miRNA: 3'- gGGGCAUG----UGCUGCCUCuUGAGc-CGc -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 29847 | 0.68 | 0.704387 |
Target: 5'- cCCCUGUugGCGcgaauGCGGucaAGCUCGGUc -3' miRNA: 3'- -GGGGCAugUGC-----UGCCuc-UUGAGCCGc -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 31817 | 0.68 | 0.704387 |
Target: 5'- aCUUCGgacaggaGCGCGAUGGAGGGCU-GGUGa -3' miRNA: 3'- -GGGGCa------UGUGCUGCCUCUUGAgCCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 27904 | 0.68 | 0.694084 |
Target: 5'- aCUCGUccaguagcgGCACG-CGGGGc-CUCGGCGg -3' miRNA: 3'- gGGGCA---------UGUGCuGCCUCuuGAGCCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 48345 | 0.68 | 0.694084 |
Target: 5'- gCCCgCGUGCcCGuauCGGAcuggcGAGcCUCGGCGa -3' miRNA: 3'- -GGG-GCAUGuGCu--GCCU-----CUU-GAGCCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 45164 | 0.68 | 0.694084 |
Target: 5'- gCCUCGacCGCGGCGGAu-GCuUCGGCGu -3' miRNA: 3'- -GGGGCauGUGCUGCCUcuUG-AGCCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 1245 | 0.68 | 0.694084 |
Target: 5'- uCCCC--AC-CGAUGGGGAACUCguGGCc -3' miRNA: 3'- -GGGGcaUGuGCUGCCUCUUGAG--CCGc -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 14571 | 0.68 | 0.683727 |
Target: 5'- gCCC-UGCuCGGCGGAGGcggcGCgcgCGGCGu -3' miRNA: 3'- gGGGcAUGuGCUGCCUCU----UGa--GCCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 62529 | 0.68 | 0.683727 |
Target: 5'- uUCCUGg--GCGGCGGAGAggGCggugUCGGCGc -3' miRNA: 3'- -GGGGCaugUGCUGCCUCU--UG----AGCCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 13374 | 0.69 | 0.652424 |
Target: 5'- cCCUCGgACuCGAUGGccuggacgcGGAAUUCGGCGa -3' miRNA: 3'- -GGGGCaUGuGCUGCC---------UCUUGAGCCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 28128 | 0.69 | 0.640895 |
Target: 5'- gCCCCGcggGCaacggcgGCGGCGGAucGAGCggCGGCa -3' miRNA: 3'- -GGGGCa--UG-------UGCUGCCU--CUUGa-GCCGc -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 54451 | 0.69 | 0.620968 |
Target: 5'- cCUCCGcaGCuACGACGGuGAGCgcagugUCGGCGa -3' miRNA: 3'- -GGGGCa-UG-UGCUGCCuCUUG------AGCCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 41841 | 0.7 | 0.56882 |
Target: 5'- uUCCCGU-CGCGGuCGuAGAugUCGGUGg -3' miRNA: 3'- -GGGGCAuGUGCU-GCcUCUugAGCCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 45811 | 0.71 | 0.558502 |
Target: 5'- aCCuuGgagACGCGGCGcuGGuACUCGGCGa -3' miRNA: 3'- -GGggCa--UGUGCUGCc-UCuUGAGCCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 62352 | 0.71 | 0.548238 |
Target: 5'- cCCCCG-GCGCGGUGGAcGAAgacCUUGGCGa -3' miRNA: 3'- -GGGGCaUGUGCUGCCU-CUU---GAGCCGC- -5' |
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18344 | 5' | -55.9 | NC_004681.1 | + | 29801 | 0.71 | 0.548238 |
Target: 5'- uUCCC--ACACcaGGCGcGGGAGCUCGGCa -3' miRNA: 3'- -GGGGcaUGUG--CUGC-CUCUUGAGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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