miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18345 3' -56.5 NC_004681.1 + 68606 0.66 0.6777
Target:  5'- -cCCAGGCGUGCC-GCGAGccaUUCa -3'
miRNA:   3'- gaGGUCCGCACGGuCGUUCaucAGGa -5'
18345 3' -56.5 NC_004681.1 + 71567 0.67 0.656179
Target:  5'- uUCCGcGCGgacgGCC-GCAAcGUAGUCCUc -3'
miRNA:   3'- gAGGUcCGCa---CGGuCGUU-CAUCAGGA- -5'
18345 3' -56.5 NC_004681.1 + 21157 0.67 0.645382
Target:  5'- -aCCAGGCuUGCCAGuCGAGguuUCCa -3'
miRNA:   3'- gaGGUCCGcACGGUC-GUUCaucAGGa -5'
18345 3' -56.5 NC_004681.1 + 19220 0.67 0.638897
Target:  5'- gUCCAGGCGUccacCCAGCugcgaaccucgcgccGGGU-GUCCUg -3'
miRNA:   3'- gAGGUCCGCAc---GGUCG---------------UUCAuCAGGA- -5'
18345 3' -56.5 NC_004681.1 + 52132 0.68 0.602169
Target:  5'- cCUCaAGGUGgcgGCCaAGCAgcugcacaugguGGUGGUCCUg -3'
miRNA:   3'- -GAGgUCCGCa--CGG-UCGU------------UCAUCAGGA- -5'
18345 3' -56.5 NC_004681.1 + 18276 0.69 0.538242
Target:  5'- aCUCCGGGCGcgGCaCGGCcgc-AGUCCUc -3'
miRNA:   3'- -GAGGUCCGCa-CG-GUCGuucaUCAGGA- -5'
18345 3' -56.5 NC_004681.1 + 51993 0.69 0.538242
Target:  5'- cCUCCcuGCGUGUCgAGgAAGUGGUCUc -3'
miRNA:   3'- -GAGGucCGCACGG-UCgUUCAUCAGGa -5'
18345 3' -56.5 NC_004681.1 + 32818 0.69 0.527791
Target:  5'- --aCAGGC-UGCCAGCGgaAGaGGUCCUc -3'
miRNA:   3'- gagGUCCGcACGGUCGU--UCaUCAGGA- -5'
18345 3' -56.5 NC_004681.1 + 46483 0.69 0.496922
Target:  5'- uUCCAGGCucaGUGUCAucgauGCGGGUccGGUCCa -3'
miRNA:   3'- gAGGUCCG---CACGGU-----CGUUCA--UCAGGa -5'
18345 3' -56.5 NC_004681.1 + 68945 0.7 0.4474
Target:  5'- -aCCAuGCGguaGCCAGCGAGagGGUCCUc -3'
miRNA:   3'- gaGGUcCGCa--CGGUCGUUCa-UCAGGA- -5'
18345 3' -56.5 NC_004681.1 + 75060 0.71 0.428369
Target:  5'- gUCCAGGUcucugGCCGuGCGAGUAgGUCCa -3'
miRNA:   3'- gAGGUCCGca---CGGU-CGUUCAU-CAGGa -5'
18345 3' -56.5 NC_004681.1 + 28059 0.71 0.391788
Target:  5'- gUCgAGGCgGUGgCGGCAAGaAGUCCa -3'
miRNA:   3'- gAGgUCCG-CACgGUCGUUCaUCAGGa -5'
18345 3' -56.5 NC_004681.1 + 68662 1.08 0.001133
Target:  5'- gCUCCAGGCGUGCCAGCAAGUAGUCCUg -3'
miRNA:   3'- -GAGGUCCGCACGGUCGUUCAUCAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.