miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18345 5' -58.9 NC_004681.1 + 38345 0.67 0.594329
Target:  5'- cGGAGggUCcugACaCGGUgccuAUGGCGCCgccgCGGGa -3'
miRNA:   3'- -CCUCuuGG---UG-GCCG----UACCGCGG----GUCC- -5'
18345 5' -58.9 NC_004681.1 + 15831 0.67 0.583966
Target:  5'- aGGAGugcAUCGCagaGuGCGUGGCGUCCAa- -3'
miRNA:   3'- -CCUCu--UGGUGg--C-CGUACCGCGGGUcc -5'
18345 5' -58.9 NC_004681.1 + 62567 0.67 0.583966
Target:  5'- aGGAGAuggaaCGCCGGgAgcGCGCCgAGGc -3'
miRNA:   3'- -CCUCUug---GUGGCCgUacCGCGGgUCC- -5'
18345 5' -58.9 NC_004681.1 + 25214 0.67 0.580864
Target:  5'- cGGcGGcGACCGCuucuucaacaacggCGGcCAUGGCGCCCGcGGc -3'
miRNA:   3'- -CC-UC-UUGGUG--------------GCC-GUACCGCGGGU-CC- -5'
18345 5' -58.9 NC_004681.1 + 51285 0.67 0.573639
Target:  5'- uGGAGAGaa----GCAUGGCGCCgAGGa -3'
miRNA:   3'- -CCUCUUgguggcCGUACCGCGGgUCC- -5'
18345 5' -58.9 NC_004681.1 + 22784 0.67 0.573639
Target:  5'- gGGGGcGCCACUccuugGGCuggucGGUGCCgGGGa -3'
miRNA:   3'- -CCUCuUGGUGG-----CCGua---CCGCGGgUCC- -5'
18345 5' -58.9 NC_004681.1 + 6512 0.67 0.563356
Target:  5'- aGGAGuGCUgGCCGGUcgcuucGGCGCCgGGGc -3'
miRNA:   3'- -CCUCuUGG-UGGCCGua----CCGCGGgUCC- -5'
18345 5' -58.9 NC_004681.1 + 25421 0.67 0.563356
Target:  5'- gGGAgGggUCGgUGGCGUGGUgucgauagGCUCAGGc -3'
miRNA:   3'- -CCU-CuuGGUgGCCGUACCG--------CGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 9482 0.67 0.563356
Target:  5'- aGuGGcCCACCaGgAUGGUGCCCAGcGg -3'
miRNA:   3'- cCuCUuGGUGGcCgUACCGCGGGUC-C- -5'
18345 5' -58.9 NC_004681.1 + 15053 0.67 0.553122
Target:  5'- aGAGAGCCcaugaGCUGGUcgaugGGCGCCUuGGc -3'
miRNA:   3'- cCUCUUGG-----UGGCCGua---CCGCGGGuCC- -5'
18345 5' -58.9 NC_004681.1 + 56139 0.67 0.552101
Target:  5'- uGGAGAACCACCGccGCAUcaaGGCGaugaagcUCCGcGGc -3'
miRNA:   3'- -CCUCUUGGUGGC--CGUA---CCGC-------GGGU-CC- -5'
18345 5' -58.9 NC_004681.1 + 471 0.67 0.542944
Target:  5'- aGGucuuGACCGCgGGCucguccucgcggAUGGCGCCCAu- -3'
miRNA:   3'- -CCuc--UUGGUGgCCG------------UACCGCGGGUcc -5'
18345 5' -58.9 NC_004681.1 + 42504 0.67 0.542944
Target:  5'- cGAGcccGACCGCUGGCAggaauGCGCCCccGGc -3'
miRNA:   3'- cCUC---UUGGUGGCCGUac---CGCGGGu-CC- -5'
18345 5' -58.9 NC_004681.1 + 10759 0.68 0.532829
Target:  5'- cGAcGGCCGCgGGCAccgGGgGCgCCAGGc -3'
miRNA:   3'- cCUcUUGGUGgCCGUa--CCgCG-GGUCC- -5'
18345 5' -58.9 NC_004681.1 + 44486 0.68 0.532829
Target:  5'- aGGAGggUgAguugcCCGGacgGGCGCCCguAGGg -3'
miRNA:   3'- -CCUCuuGgU-----GGCCguaCCGCGGG--UCC- -5'
18345 5' -58.9 NC_004681.1 + 705 0.68 0.532829
Target:  5'- cGGAGGAaguucUCGaCGGCGucgaUGGCGCCCugaAGGa -3'
miRNA:   3'- -CCUCUU-----GGUgGCCGU----ACCGCGGG---UCC- -5'
18345 5' -58.9 NC_004681.1 + 27204 0.68 0.522782
Target:  5'- cGGGcGAAguaCACCGGCGUcGCGCCCcuccuGGc -3'
miRNA:   3'- -CCU-CUUg--GUGGCCGUAcCGCGGGu----CC- -5'
18345 5' -58.9 NC_004681.1 + 37772 0.68 0.522782
Target:  5'- uGGAGAagcgacgcgcgGCCGCUGGCGaGGC-CCCGc- -3'
miRNA:   3'- -CCUCU-----------UGGUGGCCGUaCCGcGGGUcc -5'
18345 5' -58.9 NC_004681.1 + 52341 0.68 0.522782
Target:  5'- aGAGAgucGCCACCGGCcagguUGGUcagGUCgGGGa -3'
miRNA:   3'- cCUCU---UGGUGGCCGu----ACCG---CGGgUCC- -5'
18345 5' -58.9 NC_004681.1 + 55555 0.68 0.512809
Target:  5'- -cGGAAUCACCGGC-UGGgGCCUu-- -3'
miRNA:   3'- ccUCUUGGUGGCCGuACCgCGGGucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.