miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18346 3' -56.4 NC_004681.1 + 12253 0.66 0.75686
Target:  5'- gGUGGCCcgGUgCUGUGGcCGACUcccgagGUCGc -3'
miRNA:   3'- aCGCCGGa-CA-GAUACCaGCUGG------CAGU- -5'
18346 3' -56.4 NC_004681.1 + 19465 0.66 0.746803
Target:  5'- cGCccaGGCCgGU--GUGGUCGACCcgGUCGa -3'
miRNA:   3'- aCG---CCGGaCAgaUACCAGCUGG--CAGU- -5'
18346 3' -56.4 NC_004681.1 + 35166 0.66 0.746803
Target:  5'- aGCGcaccgaGCCUGccaCUGUGGUUG-CCGUCc -3'
miRNA:   3'- aCGC------CGGACa--GAUACCAGCuGGCAGu -5'
18346 3' -56.4 NC_004681.1 + 2021 0.66 0.746803
Target:  5'- cGCGGCCaggugGUC-GUGGagggCGGCCG-CAc -3'
miRNA:   3'- aCGCCGGa----CAGaUACCa---GCUGGCaGU- -5'
18346 3' -56.4 NC_004681.1 + 34008 0.67 0.695084
Target:  5'- gGUGuGCCcGUCgucGUGGUCGACUG-CGg -3'
miRNA:   3'- aCGC-CGGaCAGa--UACCAGCUGGCaGU- -5'
18346 3' -56.4 NC_004681.1 + 30138 0.67 0.684526
Target:  5'- gGCGGCCUGUg---GGUCGGgC-UCAg -3'
miRNA:   3'- aCGCCGGACAgauaCCAGCUgGcAGU- -5'
18346 3' -56.4 NC_004681.1 + 50061 0.67 0.684526
Target:  5'- aUGCGGCCcuUCUcgGGUccgcgcuuggCGAcuCCGUCAa -3'
miRNA:   3'- -ACGCCGGacAGAuaCCA----------GCU--GGCAGU- -5'
18346 3' -56.4 NC_004681.1 + 40234 0.67 0.683468
Target:  5'- cGCGGCCUGcCUGUcccgggcGGUC-ACCGa-- -3'
miRNA:   3'- aCGCCGGACaGAUA-------CCAGcUGGCagu -5'
18346 3' -56.4 NC_004681.1 + 27035 0.68 0.641921
Target:  5'- cGCGGUCgccuucgaGUCcGUGGUCGG-CGUCGa -3'
miRNA:   3'- aCGCCGGa-------CAGaUACCAGCUgGCAGU- -5'
18346 3' -56.4 NC_004681.1 + 17146 0.68 0.599176
Target:  5'- gGCGGCCUG-CU-UGGUCcACUGaUCAa -3'
miRNA:   3'- aCGCCGGACaGAuACCAGcUGGC-AGU- -5'
18346 3' -56.4 NC_004681.1 + 69126 0.68 0.588535
Target:  5'- gUGCGGCCcggUGUCa--GGUCGcACuCGUCGu -3'
miRNA:   3'- -ACGCCGG---ACAGauaCCAGC-UG-GCAGU- -5'
18346 3' -56.4 NC_004681.1 + 37397 0.69 0.577928
Target:  5'- cGCGGCCU-UCU-UGGcggCGACgGUCAa -3'
miRNA:   3'- aCGCCGGAcAGAuACCa--GCUGgCAGU- -5'
18346 3' -56.4 NC_004681.1 + 17805 0.7 0.475302
Target:  5'- cGCGGCC-GUCgacUGG-CGAaCCGUCGa -3'
miRNA:   3'- aCGCCGGaCAGau-ACCaGCU-GGCAGU- -5'
18346 3' -56.4 NC_004681.1 + 16702 0.72 0.373985
Target:  5'- cGCGGCCUGcagUUGcaGGUCGACCGg-- -3'
miRNA:   3'- aCGCCGGACa--GAUa-CCAGCUGGCagu -5'
18346 3' -56.4 NC_004681.1 + 68881 1.08 0.001316
Target:  5'- cUGCGGCCUGUCUAUGGUCGACCGUCAu -3'
miRNA:   3'- -ACGCCGGACAGAUACCAGCUGGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.