miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18346 5' -59 NC_004681.1 + 60651 0.66 0.574053
Target:  5'- -gCGGCCcgaGGCGUGCgGCgUGAC-UACc -3'
miRNA:   3'- aaGCCGGa--CCGCACGgUG-ACUGuGUG- -5'
18346 5' -59 NC_004681.1 + 69359 0.66 0.563492
Target:  5'- aUCGGCCcaucaGGUGUcggacagacccaGCCGaUGACGCGCu -3'
miRNA:   3'- aAGCCGGa----CCGCA------------CGGUgACUGUGUG- -5'
18346 5' -59 NC_004681.1 + 64219 0.66 0.552983
Target:  5'- -aUGGUCUGGgGcgaggaugGCCGCUGGCAUg- -3'
miRNA:   3'- aaGCCGGACCgCa-------CGGUGACUGUGug -5'
18346 5' -59 NC_004681.1 + 30055 0.66 0.552983
Target:  5'- aUCGGCCUcGGagcucCCGCUGuCGCGCa -3'
miRNA:   3'- aAGCCGGA-CCgcac-GGUGACuGUGUG- -5'
18346 5' -59 NC_004681.1 + 28401 0.66 0.542533
Target:  5'- -aUGGCCUGGCG-GUCACcccGGCuccCGCg -3'
miRNA:   3'- aaGCCGGACCGCaCGGUGa--CUGu--GUG- -5'
18346 5' -59 NC_004681.1 + 49345 0.66 0.532149
Target:  5'- -gCGGCgCcgcgGGCGcUGaCCACUGgGCGCACa -3'
miRNA:   3'- aaGCCG-Ga---CCGC-AC-GGUGAC-UGUGUG- -5'
18346 5' -59 NC_004681.1 + 68734 0.67 0.461803
Target:  5'- -cUGGCaccgcGGUGUGUCAgUGGCACGCc -3'
miRNA:   3'- aaGCCGga---CCGCACGGUgACUGUGUG- -5'
18346 5' -59 NC_004681.1 + 53343 0.67 0.461803
Target:  5'- cUUGGCCgccUGGUgcagGUGCCACUcGACACc- -3'
miRNA:   3'- aAGCCGG---ACCG----CACGGUGA-CUGUGug -5'
18346 5' -59 NC_004681.1 + 40482 0.68 0.405608
Target:  5'- -cCGGCCacgcUGGCgGUGCCGCUcuuGCugGCg -3'
miRNA:   3'- aaGCCGG----ACCG-CACGGUGAc--UGugUG- -5'
18346 5' -59 NC_004681.1 + 3241 0.69 0.370619
Target:  5'- aUCaGGCCcuggaggagGGCGaGCCGCUgGGCGCGCg -3'
miRNA:   3'- aAG-CCGGa--------CCGCaCGGUGA-CUGUGUG- -5'
18346 5' -59 NC_004681.1 + 54456 0.7 0.353914
Target:  5'- -gUGGCgaGGCGUGCCcACUuGCGCAg -3'
miRNA:   3'- aaGCCGgaCCGCACGG-UGAcUGUGUg -5'
18346 5' -59 NC_004681.1 + 61882 0.7 0.344955
Target:  5'- cUCGGUggaGGCGUGCCucaaccaguuggcGCUGugGCACc -3'
miRNA:   3'- aAGCCGga-CCGCACGG-------------UGACugUGUG- -5'
18346 5' -59 NC_004681.1 + 61859 0.7 0.313766
Target:  5'- -cUGGCCgaUGGCG-GCCGCggucuggUGGCGCGCg -3'
miRNA:   3'- aaGCCGG--ACCGCaCGGUG-------ACUGUGUG- -5'
18346 5' -59 NC_004681.1 + 25743 0.72 0.231398
Target:  5'- -aCGGCaucuccaccacgGGCGUGCCGCUGACcccggacauGCACu -3'
miRNA:   3'- aaGCCGga----------CCGCACGGUGACUG---------UGUG- -5'
18346 5' -59 NC_004681.1 + 39345 0.74 0.195203
Target:  5'- -gCGGCCcuUGGCGcccuUGCCGC-GGCGCACg -3'
miRNA:   3'- aaGCCGG--ACCGC----ACGGUGaCUGUGUG- -5'
18346 5' -59 NC_004681.1 + 68846 1.06 0.000884
Target:  5'- cUUCGGCCUGGCGUGCCACUGACACACc -3'
miRNA:   3'- -AAGCCGGACCGCACGGUGACUGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.