Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18347 | 5' | -58.1 | NC_004681.1 | + | 20851 | 0.66 | 0.64383 |
Target: 5'- -aUACACCGuCACACUCCagUGCGUa- -3' miRNA: 3'- aaGUGUGGU-GUGUGAGGggGCGCAca -5' |
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18347 | 5' | -58.1 | NC_004681.1 | + | 36438 | 0.66 | 0.622453 |
Target: 5'- gUCGCucAUCGCuuccuCUCCCCCGgGUGUc -3' miRNA: 3'- aAGUG--UGGUGugu--GAGGGGGCgCACA- -5' |
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18347 | 5' | -58.1 | NC_004681.1 | + | 14464 | 0.66 | 0.611773 |
Target: 5'- --aACGCCGCGCGCgccgCCUCCGCc--- -3' miRNA: 3'- aagUGUGGUGUGUGa---GGGGGCGcaca -5' |
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18347 | 5' | -58.1 | NC_004681.1 | + | 40952 | 0.66 | 0.611773 |
Target: 5'- ---gUACCGCgaggACGCUCCUCCGCuGUGa -3' miRNA: 3'- aaguGUGGUG----UGUGAGGGGGCG-CACa -5' |
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18347 | 5' | -58.1 | NC_004681.1 | + | 67264 | 0.66 | 0.59047 |
Target: 5'- -cCGCACCGCaACGCcgagUUCUCCGuCGUGUa -3' miRNA: 3'- aaGUGUGGUG-UGUG----AGGGGGC-GCACA- -5' |
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18347 | 5' | -58.1 | NC_004681.1 | + | 39834 | 0.69 | 0.46737 |
Target: 5'- -cCGCACCGCGCGCaccgCgCCCGCGc-- -3' miRNA: 3'- aaGUGUGGUGUGUGa---GgGGGCGCaca -5' |
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18347 | 5' | -58.1 | NC_004681.1 | + | 66436 | 0.7 | 0.41089 |
Target: 5'- cUCGCACCGuacCGCgACUCCCgCgGCGUGc -3' miRNA: 3'- aAGUGUGGU---GUG-UGAGGG-GgCGCACa -5' |
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18347 | 5' | -58.1 | NC_004681.1 | + | 49545 | 0.7 | 0.393025 |
Target: 5'- aUCGC-CCugGCcUUCCCCCGCGg-- -3' miRNA: 3'- aAGUGuGGugUGuGAGGGGGCGCaca -5' |
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18347 | 5' | -58.1 | NC_004681.1 | + | 69189 | 1.05 | 0.001329 |
Target: 5'- cUUCACACCACACACUCCCCCGCGUGUa -3' miRNA: 3'- -AAGUGUGGUGUGUGAGGGGGCGCACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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