miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18348 5' -55.8 NC_004681.1 + 41140 0.68 0.588448
Target:  5'- aGAGGGCCGucGCauGGGU--GGCUACCCuGCc -3'
miRNA:   3'- -CUUUCGGU--CG--CCCGuaUCGAUGGG-CG- -5'
18348 5' -55.8 NC_004681.1 + 42783 0.71 0.463588
Target:  5'- cGAAuGCCAGgGGGCGaAGUgcaaCCGCg -3'
miRNA:   3'- -CUUuCGGUCgCCCGUaUCGaug-GGCG- -5'
18348 5' -55.8 NC_004681.1 + 44135 0.69 0.545647
Target:  5'- cGAGGCC-GCGGGCcUGGCccucACCgGCc -3'
miRNA:   3'- cUUUCGGuCGCCCGuAUCGa---UGGgCG- -5'
18348 5' -55.8 NC_004681.1 + 44165 0.68 0.642678
Target:  5'- -uAGGCCGGUGaagguGGUGUGGCaggcCCCGCa -3'
miRNA:   3'- cuUUCGGUCGC-----CCGUAUCGau--GGGCG- -5'
18348 5' -55.8 NC_004681.1 + 46406 0.68 0.620948
Target:  5'- --uGGCCcacgauGCaGG-AUGGCUGCCCGCc -3'
miRNA:   3'- cuuUCGGu-----CGcCCgUAUCGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 47110 0.69 0.577674
Target:  5'- ---cGUCGGUGGGgAUGGUcaggGCCUGCa -3'
miRNA:   3'- cuuuCGGUCGCCCgUAUCGa---UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 48103 0.72 0.415697
Target:  5'- -cGAGCCccucaccccGGUGGGCAUcgagaAGCagaugGCCCGCg -3'
miRNA:   3'- cuUUCGG---------UCGCCCGUA-----UCGa----UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 48683 0.71 0.425033
Target:  5'- -cGGGCCAGCucccauGGGCcgAGUUcggcuucgagucGCCCGCg -3'
miRNA:   3'- cuUUCGGUCG------CCCGuaUCGA------------UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 49585 0.67 0.707318
Target:  5'- aGGAccCCGGCgacuGGGCAguagGGCUugCCGUc -3'
miRNA:   3'- -CUUucGGUCG----CCCGUa---UCGAugGGCG- -5'
18348 5' -55.8 NC_004681.1 + 52845 0.67 0.707318
Target:  5'- -uGAGCUucCGGGCGgaaGGCUggccaucggccuGCCCGCg -3'
miRNA:   3'- cuUUCGGucGCCCGUa--UCGA------------UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 59797 0.66 0.759303
Target:  5'- -cAGGCCgcacucccagcAGgGGGCGUGGCgGCgCUGCc -3'
miRNA:   3'- cuUUCGG-----------UCgCCCGUAUCGaUG-GGCG- -5'
18348 5' -55.8 NC_004681.1 + 60014 0.69 0.577674
Target:  5'- -cAAGcCCGGUGGGCAc--CUGCUCGCc -3'
miRNA:   3'- cuUUC-GGUCGCCCGUaucGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 60117 0.67 0.66437
Target:  5'- cGAAGGCgAGCaGGuGCccaccgGGCUugaggACCCGCa -3'
miRNA:   3'- -CUUUCGgUCG-CC-CGua----UCGA-----UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 60657 0.66 0.737776
Target:  5'- --cGGCCAGCGgcccgaggcgugcGGCGUGaCUACCCu- -3'
miRNA:   3'- cuuUCGGUCGC-------------CCGUAUcGAUGGGcg -5'
18348 5' -55.8 NC_004681.1 + 61258 0.74 0.284634
Target:  5'- aAAGGCCAGCGcgucaucguGCAUGGCUACCUcaaGCa -3'
miRNA:   3'- cUUUCGGUCGCc--------CGUAUCGAUGGG---CG- -5'
18348 5' -55.8 NC_004681.1 + 69217 0.66 0.728404
Target:  5'- gGGAGGCCAgggcGCGGGCGaGGCgg--CGCu -3'
miRNA:   3'- -CUUUCGGU----CGCCCGUaUCGauggGCG- -5'
18348 5' -55.8 NC_004681.1 + 69992 0.72 0.406486
Target:  5'- cGAGAGUU-GCGGGU--AGCUauGCCCGCu -3'
miRNA:   3'- -CUUUCGGuCGCCCGuaUCGA--UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 70101 1.12 0.000639
Target:  5'- cGAAAGCCAGCGGGCAUAGCUACCCGCa -3'
miRNA:   3'- -CUUUCGGUCGCCCGUAUCGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 70738 0.72 0.37964
Target:  5'- ---uGCCcguGCGGGCAUucuGCUAUCCGg -3'
miRNA:   3'- cuuuCGGu--CGCCCGUAu--CGAUGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.