Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18348 | 5' | -55.8 | NC_004681.1 | + | 3126 | 0.66 | 0.759303 |
Target: 5'- ---cGCC-GCGGGUGcgGGCaUugCCGCu -3' miRNA: 3'- cuuuCGGuCGCCCGUa-UCG-AugGGCG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 46406 | 0.68 | 0.620948 |
Target: 5'- --uGGCCcacgauGCaGG-AUGGCUGCCCGCc -3' miRNA: 3'- cuuUCGGu-----CGcCCgUAUCGAUGGGCG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 16082 | 0.68 | 0.610093 |
Target: 5'- cGGAGGCCAgcaucuggaccGCGGGgAUGGCacacCCCGa -3' miRNA: 3'- -CUUUCGGU-----------CGCCCgUAUCGau--GGGCg -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 12990 | 0.8 | 0.122049 |
Target: 5'- cGAAGCCGGUguGGGUGUGGUcACCCGCa -3' miRNA: 3'- cUUUCGGUCG--CCCGUAUCGaUGGGCG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 39786 | 0.74 | 0.299068 |
Target: 5'- aAGGGCCAuaucuuuuuguGCGGGCAauuGCUGCCuCGCc -3' miRNA: 3'- cUUUCGGU-----------CGCCCGUau-CGAUGG-GCG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 70738 | 0.72 | 0.37964 |
Target: 5'- ---uGCCcguGCGGGCAUucuGCUAUCCGg -3' miRNA: 3'- cuuuCGGu--CGCCCGUAu--CGAUGGGCg -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 17385 | 0.72 | 0.37964 |
Target: 5'- ---cGCCAGCaGGGCGUcGUcuccgggaUACCCGCc -3' miRNA: 3'- cuuuCGGUCG-CCCGUAuCG--------AUGGGCG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 13697 | 0.72 | 0.37964 |
Target: 5'- -cGAGCUGGaCGucauuGGCGUGGCcGCCCGCg -3' miRNA: 3'- cuUUCGGUC-GC-----CCGUAUCGaUGGGCG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 37482 | 0.72 | 0.406486 |
Target: 5'- aGAAGGCC-GCGGGCAU--CcAUCCGCa -3' miRNA: 3'- -CUUUCGGuCGCCCGUAucGaUGGGCG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 10344 | 0.71 | 0.434494 |
Target: 5'- --uAGCC-GUGGGUGUAGgUcACCCGCa -3' miRNA: 3'- cuuUCGGuCGCCCGUAUCgA-UGGGCG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 8676 | 0.71 | 0.444076 |
Target: 5'- gGAAGGUCGGCaggaugccggGGGCGaAGgUACCCGUc -3' miRNA: 3'- -CUUUCGGUCG----------CCCGUaUCgAUGGGCG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 6462 | 0.7 | 0.473511 |
Target: 5'- ---cGCCAuCGGGCGUGGC-GCCCa- -3' miRNA: 3'- cuuuCGGUcGCCCGUAUCGaUGGGcg -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 7693 | 0.69 | 0.556266 |
Target: 5'- cGAAGUC-GCGGGCGUAGgUGCCa-- -3' miRNA: 3'- cUUUCGGuCGCCCGUAUCgAUGGgcg -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 47110 | 0.69 | 0.577674 |
Target: 5'- ---cGUCGGUGGGgAUGGUcaggGCCUGCa -3' miRNA: 3'- cuuuCGGUCGCCCgUAUCGa---UGGGCG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 22736 | 0.69 | 0.577674 |
Target: 5'- cGAucuGCUuGCGcGCGgcGCUGCCCGCg -3' miRNA: 3'- -CUuu-CGGuCGCcCGUauCGAUGGGCG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 30063 | 0.69 | 0.577674 |
Target: 5'- -uGGGCCgaccuGGCGGGCAagGGUuccaaucugUACCCGUa -3' miRNA: 3'- cuUUCGG-----UCGCCCGUa-UCG---------AUGGGCG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 41140 | 0.68 | 0.588448 |
Target: 5'- aGAGGGCCGucGCauGGGU--GGCUACCCuGCc -3' miRNA: 3'- -CUUUCGGU--CG--CCCGuaUCGAUGGG-CG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 24898 | 0.68 | 0.610093 |
Target: 5'- --uGGCCcauGCGGGCAUGGgaAuuUCCGUg -3' miRNA: 3'- cuuUCGGu--CGCCCGUAUCgaU--GGGCG- -5' |
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18348 | 5' | -55.8 | NC_004681.1 | + | 70101 | 1.12 | 0.000639 |
Target: 5'- cGAAAGCCAGCGGGCAUAGCUACCCGCa -3' miRNA: 3'- -CUUUCGGUCGCCCGUAUCGAUGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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