miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18348 5' -55.8 NC_004681.1 + 49585 0.67 0.707318
Target:  5'- aGGAccCCGGCgacuGGGCAguagGGCUugCCGUc -3'
miRNA:   3'- -CUUucGGUCG----CCCGUa---UCGAugGGCG- -5'
18348 5' -55.8 NC_004681.1 + 25171 0.66 0.717902
Target:  5'- aGGAGGCUgAGCGaGGU---GCcGCCCGCg -3'
miRNA:   3'- -CUUUCGG-UCGC-CCGuauCGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 28640 0.67 0.675177
Target:  5'- ---uGCCuGCGGGCuugaugaacUGGUUugCCGUg -3'
miRNA:   3'- cuuuCGGuCGCCCGu--------AUCGAugGGCG- -5'
18348 5' -55.8 NC_004681.1 + 44165 0.68 0.642678
Target:  5'- -uAGGCCGGUGaagguGGUGUGGCaggcCCCGCa -3'
miRNA:   3'- cuUUCGGUCGC-----CCGUAUCGau--GGGCG- -5'
18348 5' -55.8 NC_004681.1 + 3126 0.66 0.759303
Target:  5'- ---cGCC-GCGGGUGcgGGCaUugCCGCu -3'
miRNA:   3'- cuuuCGGuCGCCCGUa-UCG-AugGGCG- -5'
18348 5' -55.8 NC_004681.1 + 30341 0.67 0.711561
Target:  5'- --cGGCCgccgccgcuguGGCGGGCGaucuuguagacguGCUugCCGCa -3'
miRNA:   3'- cuuUCGG-----------UCGCCCGUau-----------CGAugGGCG- -5'
18348 5' -55.8 NC_004681.1 + 17740 0.68 0.620948
Target:  5'- ---cGCCAGCGGGCcgGUAGUagUGCgaCGUg -3'
miRNA:   3'- cuuuCGGUCGCCCG--UAUCG--AUGg-GCG- -5'
18348 5' -55.8 NC_004681.1 + 24953 0.66 0.759303
Target:  5'- aGGGAGCCuuGGC-GGCc--GCcGCCCGCg -3'
miRNA:   3'- -CUUUCGG--UCGcCCGuauCGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 46406 0.68 0.620948
Target:  5'- --uGGCCcacgauGCaGG-AUGGCUGCCCGCc -3'
miRNA:   3'- cuuUCGGu-----CGcCCgUAUCGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 60657 0.66 0.737776
Target:  5'- --cGGCCAGCGgcccgaggcgugcGGCGUGaCUACCCu- -3'
miRNA:   3'- cuuUCGGUCGC-------------CCGUAUcGAUGGGcg -5'
18348 5' -55.8 NC_004681.1 + 16082 0.68 0.610093
Target:  5'- cGGAGGCCAgcaucuggaccGCGGGgAUGGCacacCCCGa -3'
miRNA:   3'- -CUUUCGGU-----------CGCCCgUAUCGau--GGGCg -5'
18348 5' -55.8 NC_004681.1 + 4034 0.67 0.685944
Target:  5'- -cAGGCCAGCGaagcccucGGUGUcGUUACCgGCa -3'
miRNA:   3'- cuUUCGGUCGC--------CCGUAuCGAUGGgCG- -5'
18348 5' -55.8 NC_004681.1 + 60117 0.67 0.66437
Target:  5'- cGAAGGCgAGCaGGuGCccaccgGGCUugaggACCCGCa -3'
miRNA:   3'- -CUUUCGgUCG-CC-CGua----UCGA-----UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 2029 0.67 0.661122
Target:  5'- cGAAGGCCgAGagGGGUcucugaugaagcugGUugAGUUGCCCGCa -3'
miRNA:   3'- -CUUUCGG-UCg-CCCG--------------UA--UCGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 48683 0.71 0.425033
Target:  5'- -cGGGCCAGCucccauGGGCcgAGUUcggcuucgagucGCCCGCg -3'
miRNA:   3'- cuUUCGGUCG------CCCGuaUCGA------------UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 39518 0.68 0.631813
Target:  5'- --uGGCCcaAGCGGGC-UGGCaauCCCGg -3'
miRNA:   3'- cuuUCGG--UCGCCCGuAUCGau-GGGCg -5'
18348 5' -55.8 NC_004681.1 + 30140 0.66 0.738812
Target:  5'- --cGGCCuGUGGGUcgGGCUcaggcggcgcGgCCGCg -3'
miRNA:   3'- cuuUCGGuCGCCCGuaUCGA----------UgGGCG- -5'
18348 5' -55.8 NC_004681.1 + 25061 0.66 0.717902
Target:  5'- aGAGGGCgGcGCGGGC--GGC-ACCuCGCu -3'
miRNA:   3'- -CUUUCGgU-CGCCCGuaUCGaUGG-GCG- -5'
18348 5' -55.8 NC_004681.1 + 29784 0.68 0.610093
Target:  5'- --cAGCCAGCuuGCAUGGCUuCCCa- -3'
miRNA:   3'- cuuUCGGUCGccCGUAUCGAuGGGcg -5'
18348 5' -55.8 NC_004681.1 + 19919 0.68 0.599257
Target:  5'- uGAAGGCCAccGCGGGCcu-GCUcaACaCGCa -3'
miRNA:   3'- -CUUUCGGU--CGCCCGuauCGA--UGgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.