miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18348 5' -55.8 NC_004681.1 + 25237 0.67 0.66437
Target:  5'- -----aCGGCGGcCAUGGC-GCCCGCg -3'
miRNA:   3'- cuuucgGUCGCCcGUAUCGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 60117 0.67 0.66437
Target:  5'- cGAAGGCgAGCaGGuGCccaccgGGCUugaggACCCGCa -3'
miRNA:   3'- -CUUUCGgUCG-CC-CGua----UCGA-----UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 3023 0.67 0.66437
Target:  5'- ---cGCCAGC-GGCAa---UGCCCGCa -3'
miRNA:   3'- cuuuCGGUCGcCCGUaucgAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 2029 0.67 0.661122
Target:  5'- cGAAGGCCgAGagGGGUcucugaugaagcugGUugAGUUGCCCGCa -3'
miRNA:   3'- -CUUUCGG-UCg-CCCG--------------UA--UCGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 44165 0.68 0.642678
Target:  5'- -uAGGCCGGUGaagguGGUGUGGCaggcCCCGCa -3'
miRNA:   3'- cuUUCGGUCGC-----CCGUAUCGau--GGGCG- -5'
18348 5' -55.8 NC_004681.1 + 39518 0.68 0.631813
Target:  5'- --uGGCCcaAGCGGGC-UGGCaauCCCGg -3'
miRNA:   3'- cuuUCGG--UCGCCCGuAUCGau-GGGCg -5'
18348 5' -55.8 NC_004681.1 + 46406 0.68 0.620948
Target:  5'- --uGGCCcacgauGCaGG-AUGGCUGCCCGCc -3'
miRNA:   3'- cuuUCGGu-----CGcCCgUAUCGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 17740 0.68 0.620948
Target:  5'- ---cGCCAGCGGGCcgGUAGUagUGCgaCGUg -3'
miRNA:   3'- cuuuCGGUCGCCCG--UAUCG--AUGg-GCG- -5'
18348 5' -55.8 NC_004681.1 + 16082 0.68 0.610093
Target:  5'- cGGAGGCCAgcaucuggaccGCGGGgAUGGCacacCCCGa -3'
miRNA:   3'- -CUUUCGGU-----------CGCCCgUAUCGau--GGGCg -5'
18348 5' -55.8 NC_004681.1 + 29784 0.68 0.610093
Target:  5'- --cAGCCAGCuuGCAUGGCUuCCCa- -3'
miRNA:   3'- cuuUCGGUCGccCGUAUCGAuGGGcg -5'
18348 5' -55.8 NC_004681.1 + 24898 0.68 0.610093
Target:  5'- --uGGCCcauGCGGGCAUGGgaAuuUCCGUg -3'
miRNA:   3'- cuuUCGGu--CGCCCGUAUCgaU--GGGCG- -5'
18348 5' -55.8 NC_004681.1 + 19919 0.68 0.599257
Target:  5'- uGAAGGCCAccGCGGGCcu-GCUcaACaCGCa -3'
miRNA:   3'- -CUUUCGGU--CGCCCGuauCGA--UGgGCG- -5'
18348 5' -55.8 NC_004681.1 + 33467 0.68 0.588448
Target:  5'- -cGGGCCAGUGGcCGUGGCUGauCCUGg -3'
miRNA:   3'- cuUUCGGUCGCCcGUAUCGAU--GGGCg -5'
18348 5' -55.8 NC_004681.1 + 41140 0.68 0.588448
Target:  5'- aGAGGGCCGucGCauGGGU--GGCUACCCuGCc -3'
miRNA:   3'- -CUUUCGGU--CG--CCCGuaUCGAUGGG-CG- -5'
18348 5' -55.8 NC_004681.1 + 22736 0.69 0.577674
Target:  5'- cGAucuGCUuGCGcGCGgcGCUGCCCGCg -3'
miRNA:   3'- -CUuu-CGGuCGCcCGUauCGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 47110 0.69 0.577674
Target:  5'- ---cGUCGGUGGGgAUGGUcaggGCCUGCa -3'
miRNA:   3'- cuuuCGGUCGCCCgUAUCGa---UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 14315 0.69 0.577674
Target:  5'- aGGucGCCGaggcGCGGGCcaaugAGCUGCgCGCc -3'
miRNA:   3'- -CUuuCGGU----CGCCCGua---UCGAUGgGCG- -5'
18348 5' -55.8 NC_004681.1 + 60014 0.69 0.577674
Target:  5'- -cAAGcCCGGUGGGCAc--CUGCUCGCc -3'
miRNA:   3'- cuUUC-GGUCGCCCGUaucGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 30063 0.69 0.577674
Target:  5'- -uGGGCCgaccuGGCGGGCAagGGUuccaaucugUACCCGUa -3'
miRNA:   3'- cuUUCGG-----UCGCCCGUa-UCG---------AUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 7693 0.69 0.556266
Target:  5'- cGAAGUC-GCGGGCGUAGgUGCCa-- -3'
miRNA:   3'- cUUUCGGuCGCCCGUAUCgAUGGgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.