miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18349 5' -52.1 NC_004681.1 + 51501 0.66 0.934106
Target:  5'- -uGAGCGCGgagGGCAcguUCUGCUGCa -3'
miRNA:   3'- cuUUCGCGCgcaCUGUu--AGAUGGCGc -5'
18349 5' -52.1 NC_004681.1 + 6284 0.66 0.934106
Target:  5'- cGAGGGC-CGCGaGAuCAugggcCUGCCGCGg -3'
miRNA:   3'- -CUUUCGcGCGCaCU-GUua---GAUGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 27123 0.66 0.928596
Target:  5'- cGAAGGCGacCGCGUaGGCGGUgUGCCa-- -3'
miRNA:   3'- -CUUUCGC--GCGCA-CUGUUAgAUGGcgc -5'
18349 5' -52.1 NC_004681.1 + 8619 0.66 0.928596
Target:  5'- cGAuGGC-CGCGggGGCGGUCUcaccguCCGCGa -3'
miRNA:   3'- -CUuUCGcGCGCa-CUGUUAGAu-----GGCGC- -5'
18349 5' -52.1 NC_004681.1 + 45040 0.66 0.92281
Target:  5'- -cGAGCuCGCgGUGGCGGcUCcACCGCGu -3'
miRNA:   3'- cuUUCGcGCG-CACUGUU-AGaUGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 32005 0.66 0.92281
Target:  5'- uGAGGCcCGCGaUGGCGG-CcGCCGCGa -3'
miRNA:   3'- cUUUCGcGCGC-ACUGUUaGaUGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 18089 0.66 0.92281
Target:  5'- cGGGGUGUGCGUGAUcagCgggagugGCCGCa -3'
miRNA:   3'- cUUUCGCGCGCACUGuuaGa------UGGCGc -5'
18349 5' -52.1 NC_004681.1 + 70925 0.66 0.916746
Target:  5'- -uGAGCGUGgagacCGUGACAcggugcgcgCUACCGCu -3'
miRNA:   3'- cuUUCGCGC-----GCACUGUua-------GAUGGCGc -5'
18349 5' -52.1 NC_004681.1 + 49298 0.66 0.914873
Target:  5'- cGAGGCGCGCaaggcgGGCGGUCUGcacaaccucaccguCCGCc -3'
miRNA:   3'- cUUUCGCGCGca----CUGUUAGAU--------------GGCGc -5'
18349 5' -52.1 NC_004681.1 + 67475 0.66 0.910406
Target:  5'- gGGGAGCGCggugaGCGgGACGAUucuguacggcCUGCUGCGc -3'
miRNA:   3'- -CUUUCGCG-----CGCaCUGUUA----------GAUGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 49652 0.67 0.896906
Target:  5'- cGGGAGCGggccaacgaGCGUGaaGCAggCUACUGCGc -3'
miRNA:   3'- -CUUUCGCg--------CGCAC--UGUuaGAUGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 33467 0.67 0.896906
Target:  5'- --cGGCGCGCGcGACGcggccgGUCUcaGCCaGCGu -3'
miRNA:   3'- cuuUCGCGCGCaCUGU------UAGA--UGG-CGC- -5'
18349 5' -52.1 NC_004681.1 + 14554 0.67 0.896906
Target:  5'- --cGGCGCGCGcGGCGuUCgccuCCGCc -3'
miRNA:   3'- cuuUCGCGCGCaCUGUuAGau--GGCGc -5'
18349 5' -52.1 NC_004681.1 + 43823 0.67 0.892646
Target:  5'- -uGAGCGUGCGaguucaccgagggcGGCGGUgUACUGCGg -3'
miRNA:   3'- cuUUCGCGCGCa-------------CUGUUAgAUGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 13053 0.67 0.874664
Target:  5'- --cAGCGCcggucaGCGUGACG--UUGCCGCu -3'
miRNA:   3'- cuuUCGCG------CGCACUGUuaGAUGGCGc -5'
18349 5' -52.1 NC_004681.1 + 35278 0.67 0.874664
Target:  5'- -cGAGUGUG-GUGAUGA-CUGCCGCa -3'
miRNA:   3'- cuUUCGCGCgCACUGUUaGAUGGCGc -5'
18349 5' -52.1 NC_004681.1 + 30607 0.67 0.866738
Target:  5'- uGAcGGCGUGCGUGGCccauUCggcACUGUGg -3'
miRNA:   3'- -CUuUCGCGCGCACUGuu--AGa--UGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 45753 0.68 0.858568
Target:  5'- --cGGUGgGCGUcuugcccuuguuGACGAUCU-CCGCGa -3'
miRNA:   3'- cuuUCGCgCGCA------------CUGUUAGAuGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 14491 0.68 0.841523
Target:  5'- cAGGGCGCGCugGUGGCcggugCUGgCGCGa -3'
miRNA:   3'- cUUUCGCGCG--CACUGuua--GAUgGCGC- -5'
18349 5' -52.1 NC_004681.1 + 33682 0.68 0.832665
Target:  5'- ---cGCGCGCGUGACcgcAUgUACUGgGc -3'
miRNA:   3'- cuuuCGCGCGCACUGu--UAgAUGGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.