miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18349 5' -52.1 NC_004681.1 + 3028 0.76 0.41675
Target:  5'- --cGGCGCGCGUGGCGGU--GCCGUc -3'
miRNA:   3'- cuuUCGCGCGCACUGUUAgaUGGCGc -5'
18349 5' -52.1 NC_004681.1 + 3509 0.74 0.516901
Target:  5'- ---uGCGCGCGUGGCucgcgCgggcGCCGCGg -3'
miRNA:   3'- cuuuCGCGCGCACUGuua--Ga---UGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 6091 0.71 0.669382
Target:  5'- ---uGCGCGCGU-----UCUACCGCGa -3'
miRNA:   3'- cuuuCGCGCGCAcuguuAGAUGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 6284 0.66 0.934106
Target:  5'- cGAGGGC-CGCGaGAuCAugggcCUGCCGCGg -3'
miRNA:   3'- -CUUUCGcGCGCaCU-GUua---GAUGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 8619 0.66 0.928596
Target:  5'- cGAuGGC-CGCGggGGCGGUCUcaccguCCGCGa -3'
miRNA:   3'- -CUuUCGcGCGCa-CUGUUAGAu-----GGCGC- -5'
18349 5' -52.1 NC_004681.1 + 13053 0.67 0.874664
Target:  5'- --cAGCGCcggucaGCGUGACG--UUGCCGCu -3'
miRNA:   3'- cuuUCGCG------CGCACUGUuaGAUGGCGc -5'
18349 5' -52.1 NC_004681.1 + 14491 0.68 0.841523
Target:  5'- cAGGGCGCGCugGUGGCcggugCUGgCGCGa -3'
miRNA:   3'- cUUUCGCGCG--CACUGuua--GAUgGCGC- -5'
18349 5' -52.1 NC_004681.1 + 14554 0.67 0.896906
Target:  5'- --cGGCGCGCGcGGCGuUCgccuCCGCc -3'
miRNA:   3'- cuuUCGCGCGCaCUGUuAGau--GGCGc -5'
18349 5' -52.1 NC_004681.1 + 17306 0.71 0.712849
Target:  5'- --uGGCGCGCGUGcccGCGGgacgCUACaCGCa -3'
miRNA:   3'- cuuUCGCGCGCAC---UGUUa---GAUG-GCGc -5'
18349 5' -52.1 NC_004681.1 + 18089 0.66 0.92281
Target:  5'- cGGGGUGUGCGUGAUcagCgggagugGCCGCa -3'
miRNA:   3'- cUUUCGCGCGCACUGuuaGa------UGGCGc -5'
18349 5' -52.1 NC_004681.1 + 18161 0.75 0.475519
Target:  5'- ---cGCGgGCGgGACAAUCggaagACCGCGg -3'
miRNA:   3'- cuuuCGCgCGCaCUGUUAGa----UGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 18749 0.69 0.795216
Target:  5'- cGAGGcCGCGCGUGAC-----ACCGCa -3'
miRNA:   3'- cUUUC-GCGCGCACUGuuagaUGGCGc -5'
18349 5' -52.1 NC_004681.1 + 20610 0.79 0.269744
Target:  5'- cGGAGGCGUGCGUGGaGAUUUGCCGgGu -3'
miRNA:   3'- -CUUUCGCGCGCACUgUUAGAUGGCgC- -5'
18349 5' -52.1 NC_004681.1 + 27123 0.66 0.928596
Target:  5'- cGAAGGCGacCGCGUaGGCGGUgUGCCa-- -3'
miRNA:   3'- -CUUUCGC--GCGCA-CUGUUAgAUGGcgc -5'
18349 5' -52.1 NC_004681.1 + 29823 0.83 0.167479
Target:  5'- cGAAAGCGCGCGUGuauCAG-CUGCgCGCGg -3'
miRNA:   3'- -CUUUCGCGCGCACu--GUUaGAUG-GCGC- -5'
18349 5' -52.1 NC_004681.1 + 30607 0.67 0.866738
Target:  5'- uGAcGGCGUGCGUGGCccauUCggcACUGUGg -3'
miRNA:   3'- -CUuUCGCGCGCACUGuu--AGa--UGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 32005 0.66 0.92281
Target:  5'- uGAGGCcCGCGaUGGCGG-CcGCCGCGa -3'
miRNA:   3'- cUUUCGcGCGC-ACUGUUaGaUGGCGC- -5'
18349 5' -52.1 NC_004681.1 + 33467 0.67 0.896906
Target:  5'- --cGGCGCGCGcGACGcggccgGUCUcaGCCaGCGu -3'
miRNA:   3'- cuuUCGCGCGCaCUGU------UAGA--UGG-CGC- -5'
18349 5' -52.1 NC_004681.1 + 33682 0.68 0.832665
Target:  5'- ---cGCGCGCGUGACcgcAUgUACUGgGc -3'
miRNA:   3'- cuuuCGCGCGCACUGu--UAgAUGGCgC- -5'
18349 5' -52.1 NC_004681.1 + 35278 0.67 0.874664
Target:  5'- -cGAGUGUG-GUGAUGA-CUGCCGCa -3'
miRNA:   3'- cuUUCGCGCgCACUGUUaGAUGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.