miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18350 3' -54 NC_004681.1 + 49647 0.67 0.783726
Target:  5'- aGUGCCGggaGCgGGCCAacgagcGUGAagcaGGCUACu -3'
miRNA:   3'- -UAUGGCg--CGgUUGGU------UACUg---CCGAUG- -5'
18350 3' -54 NC_004681.1 + 33456 0.67 0.783726
Target:  5'- -cACCGUcguuGCgGGCCAGUGGCcguGGCUGa -3'
miRNA:   3'- uaUGGCG----CGgUUGGUUACUG---CCGAUg -5'
18350 3' -54 NC_004681.1 + 725 0.67 0.783726
Target:  5'- cUGCCGgGaaucgaggaCGACUggUGACGGcCUACc -3'
miRNA:   3'- uAUGGCgCg--------GUUGGuuACUGCC-GAUG- -5'
18350 3' -54 NC_004681.1 + 35029 0.67 0.780739
Target:  5'- -gACCGCGCaUAuaccagacuugcucGCCGcgGACGGCa-- -3'
miRNA:   3'- uaUGGCGCG-GU--------------UGGUuaCUGCCGaug -5'
18350 3' -54 NC_004681.1 + 12396 0.67 0.780739
Target:  5'- -cACCGCGgCGacgcucgucggugaGCCGGUGACGGaCgaggACg -3'
miRNA:   3'- uaUGGCGCgGU--------------UGGUUACUGCC-Ga---UG- -5'
18350 3' -54 NC_004681.1 + 14891 0.67 0.763561
Target:  5'- -aGCUggGCGCCAGCCuucagGAUGGCcaggGCg -3'
miRNA:   3'- uaUGG--CGCGGUUGGuua--CUGCCGa---UG- -5'
18350 3' -54 NC_004681.1 + 28928 0.67 0.753269
Target:  5'- ----gGCGCCAucggaACgCGGUGACGGCaUACg -3'
miRNA:   3'- uauggCGCGGU-----UG-GUUACUGCCG-AUG- -5'
18350 3' -54 NC_004681.1 + 14319 0.67 0.753269
Target:  5'- -cGCCgagGCGCgGGCCAAUGA--GCUGCg -3'
miRNA:   3'- uaUGG---CGCGgUUGGUUACUgcCGAUG- -5'
18350 3' -54 NC_004681.1 + 45193 0.67 0.742854
Target:  5'- -gACCGCGCCAucgagaaucACCGgggAUGACcGaCUACa -3'
miRNA:   3'- uaUGGCGCGGU---------UGGU---UACUGcC-GAUG- -5'
18350 3' -54 NC_004681.1 + 13233 0.67 0.742854
Target:  5'- -cGCCGUGCCAcgaagGgCGGUGGCgGGCaGCg -3'
miRNA:   3'- uaUGGCGCGGU-----UgGUUACUG-CCGaUG- -5'
18350 3' -54 NC_004681.1 + 42555 0.68 0.733383
Target:  5'- -aAUCGCGCCGACgugguaGAUGAaguacgggucgugcaGGCUGCg -3'
miRNA:   3'- uaUGGCGCGGUUGg-----UUACUg--------------CCGAUG- -5'
18350 3' -54 NC_004681.1 + 16494 0.68 0.732326
Target:  5'- -cGCCGCGCCccggcaacuggAACUcccagauggcgGGUGGCGGCaACg -3'
miRNA:   3'- uaUGGCGCGG-----------UUGG-----------UUACUGCCGaUG- -5'
18350 3' -54 NC_004681.1 + 39268 0.68 0.720629
Target:  5'- -cGCCGCGUCAAguacuccCCGAUGugcGCGGCcACc -3'
miRNA:   3'- uaUGGCGCGGUU-------GGUUAC---UGCCGaUG- -5'
18350 3' -54 NC_004681.1 + 20659 0.68 0.710979
Target:  5'- -cGCCaGCGCC-GCCAuuugugcGGCGGUUGCu -3'
miRNA:   3'- uaUGG-CGCGGuUGGUua-----CUGCCGAUG- -5'
18350 3' -54 NC_004681.1 + 37589 0.68 0.710979
Target:  5'- gAUGcCCGCGCCaccAugCAAUccCGGCUGCc -3'
miRNA:   3'- -UAU-GGCGCGG---UugGUUAcuGCCGAUG- -5'
18350 3' -54 NC_004681.1 + 42901 0.68 0.710979
Target:  5'- -aAUCGCuggaucaucuGCuCAAcuCCGGUGGCGGCUGCg -3'
miRNA:   3'- uaUGGCG----------CG-GUU--GGUUACUGCCGAUG- -5'
18350 3' -54 NC_004681.1 + 57805 0.68 0.700183
Target:  5'- -cGCCGCGCCG-CCGagGUGGCgaaggagcggGGCUGg -3'
miRNA:   3'- uaUGGCGCGGUuGGU--UACUG----------CCGAUg -5'
18350 3' -54 NC_004681.1 + 6688 0.68 0.700183
Target:  5'- uUGCCGCGgcCCAuggcGCCcuUGACGGCg-- -3'
miRNA:   3'- uAUGGCGC--GGU----UGGuuACUGCCGaug -5'
18350 3' -54 NC_004681.1 + 27967 0.68 0.700183
Target:  5'- -cACUGCGUCAcugcucucuggaGCCAAcGGCGGCaACg -3'
miRNA:   3'- uaUGGCGCGGU------------UGGUUaCUGCCGaUG- -5'
18350 3' -54 NC_004681.1 + 52732 0.68 0.68932
Target:  5'- uUACCGUGCCAGCUcAUGucgauuGCGGUUucGCu -3'
miRNA:   3'- uAUGGCGCGGUUGGuUAC------UGCCGA--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.