miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18350 3' -54 NC_004681.1 + 14319 0.67 0.753269
Target:  5'- -cGCCgagGCGCgGGCCAAUGA--GCUGCg -3'
miRNA:   3'- uaUGG---CGCGgUUGGUUACUgcCGAUG- -5'
18350 3' -54 NC_004681.1 + 50025 0.69 0.678402
Target:  5'- -gGCCGCGCUAcaaggagcGCCu----CGGCUACg -3'
miRNA:   3'- uaUGGCGCGGU--------UGGuuacuGCCGAUG- -5'
18350 3' -54 NC_004681.1 + 60324 0.69 0.678402
Target:  5'- gGUACCGCGCUAaaaACCAucguuUGAgcccgucgUGGUUGCg -3'
miRNA:   3'- -UAUGGCGCGGU---UGGUu----ACU--------GCCGAUG- -5'
18350 3' -54 NC_004681.1 + 27967 0.68 0.700183
Target:  5'- -cACUGCGUCAcugcucucuggaGCCAAcGGCGGCaACg -3'
miRNA:   3'- uaUGGCGCGGU------------UGGUUaCUGCCGaUG- -5'
18350 3' -54 NC_004681.1 + 57805 0.68 0.700183
Target:  5'- -cGCCGCGCCG-CCGagGUGGCgaaggagcggGGCUGg -3'
miRNA:   3'- uaUGGCGCGGUuGGU--UACUG----------CCGAUg -5'
18350 3' -54 NC_004681.1 + 42901 0.68 0.710979
Target:  5'- -aAUCGCuggaucaucuGCuCAAcuCCGGUGGCGGCUGCg -3'
miRNA:   3'- uaUGGCG----------CG-GUU--GGUUACUGCCGAUG- -5'
18350 3' -54 NC_004681.1 + 39268 0.68 0.720629
Target:  5'- -cGCCGCGUCAAguacuccCCGAUGugcGCGGCcACc -3'
miRNA:   3'- uaUGGCGCGGUU-------GGUUAC---UGCCGaUG- -5'
18350 3' -54 NC_004681.1 + 16494 0.68 0.732326
Target:  5'- -cGCCGCGCCccggcaacuggAACUcccagauggcgGGUGGCGGCaACg -3'
miRNA:   3'- uaUGGCGCGG-----------UUGG-----------UUACUGCCGaUG- -5'
18350 3' -54 NC_004681.1 + 45193 0.67 0.742854
Target:  5'- -gACCGCGCCAucgagaaucACCGgggAUGACcGaCUACa -3'
miRNA:   3'- uaUGGCGCGGU---------UGGU---UACUGcC-GAUG- -5'
18350 3' -54 NC_004681.1 + 69039 0.69 0.656445
Target:  5'- -cACCGgGCCGcACCugcgacaccGAUGGCUGCg -3'
miRNA:   3'- uaUGGCgCGGU-UGGuua------CUGCCGAUG- -5'
18350 3' -54 NC_004681.1 + 39079 0.69 0.634398
Target:  5'- -gACCGCGCCGugCAAgcccUGGUGGCcACc -3'
miRNA:   3'- uaUGGCGCGGUugGUU----ACUGCCGaUG- -5'
18350 3' -54 NC_004681.1 + 73542 0.7 0.601334
Target:  5'- cAUAUCGCGCguAUacgcgUAGUGACGGUUACc -3'
miRNA:   3'- -UAUGGCGCGguUG-----GUUACUGCCGAUG- -5'
18350 3' -54 NC_004681.1 + 13572 0.73 0.42439
Target:  5'- cGUACgCGCGCUucaaGGCCGcgGGCGGCcACg -3'
miRNA:   3'- -UAUG-GCGCGG----UUGGUuaCUGCCGaUG- -5'
18350 3' -54 NC_004681.1 + 26449 0.72 0.453555
Target:  5'- --uUCGCGCC-GCCAGaGuACGGCUACg -3'
miRNA:   3'- uauGGCGCGGuUGGUUaC-UGCCGAUG- -5'
18350 3' -54 NC_004681.1 + 1541 0.72 0.494064
Target:  5'- -gACCGgGCCAGCCuucagcugGGCGGCg-- -3'
miRNA:   3'- uaUGGCgCGGUUGGuua-----CUGCCGaug -5'
18350 3' -54 NC_004681.1 + 4849 0.71 0.525498
Target:  5'- -cGCCGUaCCcACCGcaGUGAUGGCUACc -3'
miRNA:   3'- uaUGGCGcGGuUGGU--UACUGCCGAUG- -5'
18350 3' -54 NC_004681.1 + 21087 0.7 0.590354
Target:  5'- -cACCGCGCUGAUgAGcGACGGCa-- -3'
miRNA:   3'- uaUGGCGCGGUUGgUUaCUGCCGaug -5'
18350 3' -54 NC_004681.1 + 51492 0.7 0.590354
Target:  5'- -gACCGCuGCC-GCCAGcu-CGGCUACa -3'
miRNA:   3'- uaUGGCG-CGGuUGGUUacuGCCGAUG- -5'
18350 3' -54 NC_004681.1 + 54713 0.7 0.601334
Target:  5'- --uCCGUGCUGcACCAGUGGC-GCUACg -3'
miRNA:   3'- uauGGCGCGGU-UGGUUACUGcCGAUG- -5'
18350 3' -54 NC_004681.1 + 26734 0.7 0.601334
Target:  5'- --cCCGCcCCGGCCAAccuCGGCUACa -3'
miRNA:   3'- uauGGCGcGGUUGGUUacuGCCGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.