miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18350 5' -52.2 NC_004681.1 + 8422 0.66 0.933434
Target:  5'- cGGACcucGACCUCGGggaugucguuguccaGGCCGUccuugGCGGCg- -3'
miRNA:   3'- -CCUG---UUGGAGUCa--------------CUGGUA-----UGCCGac -5'
18350 5' -52.2 NC_004681.1 + 63986 0.66 0.927343
Target:  5'- -cACua-CUCGGUGACCc--CGGCUGa -3'
miRNA:   3'- ccUGuugGAGUCACUGGuauGCCGAC- -5'
18350 5' -52.2 NC_004681.1 + 13038 0.66 0.915416
Target:  5'- uGACGuuGCCgcUCAG-GGCCuuuccguugacaGUGCGGCUGg -3'
miRNA:   3'- cCUGU--UGG--AGUCaCUGG------------UAUGCCGAC- -5'
18350 5' -52.2 NC_004681.1 + 47580 0.67 0.902394
Target:  5'- -aGCGACUUgUAGUGGCCGUcgcacGCGGCg- -3'
miRNA:   3'- ccUGUUGGA-GUCACUGGUA-----UGCCGac -5'
18350 5' -52.2 NC_004681.1 + 15993 0.67 0.895479
Target:  5'- cGGCGAUCUucaCGGUGACCcacGCGGCc- -3'
miRNA:   3'- cCUGUUGGA---GUCACUGGua-UGCCGac -5'
18350 5' -52.2 NC_004681.1 + 2954 0.67 0.873163
Target:  5'- cGGuCGagcGCCUCggggacGGUGACCGUguaGCGGCg- -3'
miRNA:   3'- -CCuGU---UGGAG------UCACUGGUA---UGCCGac -5'
18350 5' -52.2 NC_004681.1 + 27610 0.68 0.857035
Target:  5'- gGGuCAcCCUCGGUGGCgcugGCGGCg- -3'
miRNA:   3'- -CCuGUuGGAGUCACUGgua-UGCCGac -5'
18350 5' -52.2 NC_004681.1 + 7574 0.68 0.857035
Target:  5'- aGGACGGCCggGGaGGCCGUgAUGGCa- -3'
miRNA:   3'- -CCUGUUGGagUCaCUGGUA-UGCCGac -5'
18350 5' -52.2 NC_004681.1 + 34050 0.68 0.848615
Target:  5'- cGGACGggACCUCAGUca-CAUccACGGCUu -3'
miRNA:   3'- -CCUGU--UGGAGUCAcugGUA--UGCCGAc -5'
18350 5' -52.2 NC_004681.1 + 39043 0.68 0.848615
Target:  5'- cGGuCAGCCgcagaugcaCGGUGGCCGguUGCaGGCUGc -3'
miRNA:   3'- -CCuGUUGGa--------GUCACUGGU--AUG-CCGAC- -5'
18350 5' -52.2 NC_004681.1 + 17833 0.68 0.83997
Target:  5'- uGGCGACCUCGGUguugugcugcuuGACC--GCGGCc- -3'
miRNA:   3'- cCUGUUGGAGUCA------------CUGGuaUGCCGac -5'
18350 5' -52.2 NC_004681.1 + 68535 0.68 0.83997
Target:  5'- cGGCAGCCUCAGUagaguGCCGUccUGGUUGa -3'
miRNA:   3'- cCUGUUGGAGUCAc----UGGUAu-GCCGAC- -5'
18350 5' -52.2 NC_004681.1 + 8820 0.68 0.831106
Target:  5'- aGGuccCGGCUUCAGcGACCGcgGCGGCg- -3'
miRNA:   3'- -CCu--GUUGGAGUCaCUGGUa-UGCCGac -5'
18350 5' -52.2 NC_004681.1 + 29494 0.68 0.822034
Target:  5'- gGGACcACCUCGGUGGCUGUcACGuucGCa- -3'
miRNA:   3'- -CCUGuUGGAGUCACUGGUA-UGC---CGac -5'
18350 5' -52.2 NC_004681.1 + 12927 0.69 0.803304
Target:  5'- uGGACGuACCggcgcCAaUGGCCGUACGuGCUGc -3'
miRNA:   3'- -CCUGU-UGGa----GUcACUGGUAUGC-CGAC- -5'
18350 5' -52.2 NC_004681.1 + 69627 0.69 0.803304
Target:  5'- gGGGCAcggccGCCgcagCAGUGAgCAcACGGCg- -3'
miRNA:   3'- -CCUGU-----UGGa---GUCACUgGUaUGCCGac -5'
18350 5' -52.2 NC_004681.1 + 17492 0.69 0.78386
Target:  5'- uGGGCGGCCUCGGaGACUuccgGGUUGg -3'
miRNA:   3'- -CCUGUUGGAGUCaCUGGuaugCCGAC- -5'
18350 5' -52.2 NC_004681.1 + 25043 0.69 0.773897
Target:  5'- cGACAACa-CGGUGACCGcagaggGCGGCg- -3'
miRNA:   3'- cCUGUUGgaGUCACUGGUa-----UGCCGac -5'
18350 5' -52.2 NC_004681.1 + 67294 0.69 0.771887
Target:  5'- cGACAGCCUCaucgccuuccuucucGGUGGcgaugcgacggacauCCAUGCGGaCUGa -3'
miRNA:   3'- cCUGUUGGAG---------------UCACU---------------GGUAUGCC-GAC- -5'
18350 5' -52.2 NC_004681.1 + 9914 0.72 0.650591
Target:  5'- cGGACAACCUUGGUcucgaccucguccucGACCAgcuUGGCUu -3'
miRNA:   3'- -CCUGUUGGAGUCA---------------CUGGUau-GCCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.