miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18350 5' -52.2 NC_004681.1 + 74378 0.73 0.584817
Target:  5'- uGGACAGCCUCcGUGAggcacacaagacacuCCGggcaAUGGCUGa -3'
miRNA:   3'- -CCUGUUGGAGuCACU---------------GGUa---UGCCGAC- -5'
18350 5' -52.2 NC_004681.1 + 55959 0.75 0.475011
Target:  5'- uGGACAACCUCgucggGGUG-CCGgugcuCGGCUGc -3'
miRNA:   3'- -CCUGUUGGAG-----UCACuGGUau---GCCGAC- -5'
18350 5' -52.2 NC_004681.1 + 16395 0.76 0.407163
Target:  5'- cGGCcACCUCcaagGGUGACCAggccaugcgcUACGGCUGg -3'
miRNA:   3'- cCUGuUGGAG----UCACUGGU----------AUGCCGAC- -5'
18350 5' -52.2 NC_004681.1 + 70000 0.79 0.298571
Target:  5'- aGGACAGCCUCAGUcGgUAU-CGGCUGa -3'
miRNA:   3'- -CCUGUUGGAGUCAcUgGUAuGCCGAC- -5'
18350 5' -52.2 NC_004681.1 + 70592 1.11 0.002147
Target:  5'- uGGACAACCUCAGUGACCAUACGGCUGa -3'
miRNA:   3'- -CCUGUUGGAGUCACUGGUAUGCCGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.