miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18351 3' -57.5 NC_004681.1 + 68945 0.66 0.704738
Target:  5'- aCCauGCGGUaGCCagCGAgAGGGUCCUCc -3'
miRNA:   3'- aGGc-CGCUAaCGG--GCUgUCUCAGGAG- -5'
18351 3' -57.5 NC_004681.1 + 52893 0.66 0.698491
Target:  5'- cCCGGCGAcgaaauccaaauccUGCCCGACuccGAG-CCg- -3'
miRNA:   3'- aGGCCGCUa-------------ACGGGCUGu--CUCaGGag -5'
18351 3' -57.5 NC_004681.1 + 14462 0.66 0.694314
Target:  5'- -gCGGCGAUcaUG-CgGGCGGAGguggCCUCg -3'
miRNA:   3'- agGCCGCUA--ACgGgCUGUCUCa---GGAG- -5'
18351 3' -57.5 NC_004681.1 + 22900 0.66 0.692222
Target:  5'- cCCGGCGAUgccguaguagcgGCCCacGACAGgccccgugguggGGUCgUCa -3'
miRNA:   3'- aGGCCGCUAa-----------CGGG--CUGUC------------UCAGgAG- -5'
18351 3' -57.5 NC_004681.1 + 798 0.66 0.684884
Target:  5'- gCUGGCGAUccUGCUCGcACAGAGcgcacguuucugggaCCUCc -3'
miRNA:   3'- aGGCCGCUA--ACGGGC-UGUCUCa--------------GGAG- -5'
18351 3' -57.5 NC_004681.1 + 71259 0.66 0.683834
Target:  5'- gCCaGCGuggaaAUUGCCCGACuccAGUgCCUCa -3'
miRNA:   3'- aGGcCGC-----UAACGGGCUGuc-UCA-GGAG- -5'
18351 3' -57.5 NC_004681.1 + 59962 0.66 0.683834
Target:  5'- gUUCGGCGAggaUGuCCCGGCAGucgCCg- -3'
miRNA:   3'- -AGGCCGCUa--AC-GGGCUGUCucaGGag -5'
18351 3' -57.5 NC_004681.1 + 44472 0.66 0.673308
Target:  5'- cCCGGaCGGgcGCCCG-UAGGGUCagguCUCg -3'
miRNA:   3'- aGGCC-GCUaaCGGGCuGUCUCAG----GAG- -5'
18351 3' -57.5 NC_004681.1 + 18777 0.66 0.661688
Target:  5'- gUCCaGGCGGcUGCCCGuuGCccugaugcugcugAGGGUUCUCc -3'
miRNA:   3'- -AGG-CCGCUaACGGGC--UG-------------UCUCAGGAG- -5'
18351 3' -57.5 NC_004681.1 + 74071 0.66 0.652157
Target:  5'- aUCCGGUGAggcaUGCCCGGucCAucAGUCCa- -3'
miRNA:   3'- -AGGCCGCUa---ACGGGCU--GUc-UCAGGag -5'
18351 3' -57.5 NC_004681.1 + 29639 0.67 0.609722
Target:  5'- -gCGGCGA-UGCCCGAgcCGGAagccGUCCa- -3'
miRNA:   3'- agGCCGCUaACGGGCU--GUCU----CAGGag -5'
18351 3' -57.5 NC_004681.1 + 46719 0.67 0.599136
Target:  5'- gUgGGCGugUGCggGGCGGGGUCCUCg -3'
miRNA:   3'- aGgCCGCuaACGggCUGUCUCAGGAG- -5'
18351 3' -57.5 NC_004681.1 + 13566 0.68 0.567569
Target:  5'- aUCCGGgucaucgGAUUGCCCG-CGaGGUCCUUc -3'
miRNA:   3'- -AGGCCg------CUAACGGGCuGUcUCAGGAG- -5'
18351 3' -57.5 NC_004681.1 + 12306 0.68 0.537468
Target:  5'- aCCGGgGAUgcggcgcgcggggaaGCCCGACGccGGGUCCg- -3'
miRNA:   3'- aGGCCgCUAa--------------CGGGCUGU--CUCAGGag -5'
18351 3' -57.5 NC_004681.1 + 3078 0.69 0.516018
Target:  5'- aCCGGCugccucGAUgGCCgCGAauaucuCGGGGUCCUCg -3'
miRNA:   3'- aGGCCG------CUAaCGG-GCU------GUCUCAGGAG- -5'
18351 3' -57.5 NC_004681.1 + 24557 0.69 0.516018
Target:  5'- cCCGGCGccucGUUGCCgGACAGccGGUCa-- -3'
miRNA:   3'- aGGCCGC----UAACGGgCUGUC--UCAGgag -5'
18351 3' -57.5 NC_004681.1 + 40490 0.7 0.428639
Target:  5'- gCCGccaCGAUguagcaaucgUGCCCGACGuAGUCCUCg -3'
miRNA:   3'- aGGCc--GCUA----------ACGGGCUGUcUCAGGAG- -5'
18351 3' -57.5 NC_004681.1 + 24102 0.71 0.401495
Target:  5'- uUCCGGCGccaGCCUGGCGGAcGcCUUCa -3'
miRNA:   3'- -AGGCCGCuaaCGGGCUGUCU-CaGGAG- -5'
18351 3' -57.5 NC_004681.1 + 70717 1.1 0.000713
Target:  5'- aUCCGGCGAUUGCCCGACAGAGUCCUCa -3'
miRNA:   3'- -AGGCCGCUAACGGGCUGUCUCAGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.