miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18352 3' -56.9 NC_004681.1 + 75336 0.66 0.752526
Target:  5'- uCUGcGCA-CGcCACGACAgACaGGGAGAc -3'
miRNA:   3'- -GAC-CGUgGCaGUGCUGU-UGcCCCUCU- -5'
18352 3' -56.9 NC_004681.1 + 73793 0.66 0.752526
Target:  5'- -aGGCAacgugaccaCGUCACGGuCuuCGcGGGAGAu -3'
miRNA:   3'- gaCCGUg--------GCAGUGCU-GuuGC-CCCUCU- -5'
18352 3' -56.9 NC_004681.1 + 48606 0.66 0.732426
Target:  5'- -aGGCAuCCGcCAaGAgGACGGGGAc- -3'
miRNA:   3'- gaCCGU-GGCaGUgCUgUUGCCCCUcu -5'
18352 3' -56.9 NC_004681.1 + 51826 0.66 0.73141
Target:  5'- -gGGCgGCCG-C-CGACGAccaccagguucccCGGGGAGAa -3'
miRNA:   3'- gaCCG-UGGCaGuGCUGUU-------------GCCCCUCU- -5'
18352 3' -56.9 NC_004681.1 + 34124 0.66 0.715045
Target:  5'- aCUGGCcUCGUCuccgcagucgaccACGACGACGGGcacaccugcguacccGAGGu -3'
miRNA:   3'- -GACCGuGGCAG-------------UGCUGUUGCCC---------------CUCU- -5'
18352 3' -56.9 NC_004681.1 + 31246 0.66 0.711953
Target:  5'- -cGGCGCCGaguguuuggcUACGGCAACGucGGAGAc -3'
miRNA:   3'- gaCCGUGGCa---------GUGCUGUUGCc-CCUCU- -5'
18352 3' -56.9 NC_004681.1 + 50992 0.66 0.711953
Target:  5'- aUGGaaCACCGgCGuCGACGuCGGGGAGc -3'
miRNA:   3'- gACC--GUGGCaGU-GCUGUuGCCCCUCu -5'
18352 3' -56.9 NC_004681.1 + 23626 0.66 0.711953
Target:  5'- cCUGGUcCCGuUCGcCGACGACGGcGAGc -3'
miRNA:   3'- -GACCGuGGC-AGU-GCUGUUGCCcCUCu -5'
18352 3' -56.9 NC_004681.1 + 2803 0.66 0.701603
Target:  5'- -cGGCGCCGUcCGCGAauuGCacGGAGAa -3'
miRNA:   3'- gaCCGUGGCA-GUGCUgu-UGccCCUCU- -5'
18352 3' -56.9 NC_004681.1 + 73564 0.67 0.691191
Target:  5'- uUGGCACUGUCcucgAgGACAAUGGuGGGc- -3'
miRNA:   3'- gACCGUGGCAG----UgCUGUUGCC-CCUcu -5'
18352 3' -56.9 NC_004681.1 + 62699 0.67 0.691191
Target:  5'- -cGGCGCCGgaugaGGCgGACGGGGuGGg -3'
miRNA:   3'- gaCCGUGGCagug-CUG-UUGCCCCuCU- -5'
18352 3' -56.9 NC_004681.1 + 66945 0.67 0.684917
Target:  5'- cCUGGUGCCG-CgcgccgagcucgaagGCGACAuCGGGGAc- -3'
miRNA:   3'- -GACCGUGGCaG---------------UGCUGUuGCCCCUcu -5'
18352 3' -56.9 NC_004681.1 + 25246 0.67 0.680725
Target:  5'- aUGGCGCC--CGCGGCGGCGGuuGGGu -3'
miRNA:   3'- gACCGUGGcaGUGCUGUUGCCccUCU- -5'
18352 3' -56.9 NC_004681.1 + 1367 0.67 0.680725
Target:  5'- -gGGCGCCcUC-CGACAuguCGGGGGc- -3'
miRNA:   3'- gaCCGUGGcAGuGCUGUu--GCCCCUcu -5'
18352 3' -56.9 NC_004681.1 + 11877 0.67 0.670217
Target:  5'- aUGGCACCGaUCucguagaaGCGGCcacCGGGGAa- -3'
miRNA:   3'- gACCGUGGC-AG--------UGCUGuu-GCCCCUcu -5'
18352 3' -56.9 NC_004681.1 + 23731 0.67 0.670217
Target:  5'- -cGGCucGCCGUCGuCGGCgAACGGgaccaGGAGGa -3'
miRNA:   3'- gaCCG--UGGCAGU-GCUG-UUGCC-----CCUCU- -5'
18352 3' -56.9 NC_004681.1 + 27091 0.67 0.659676
Target:  5'- uUGGCACCGUcCACucGCAccCGGuGGAGGc -3'
miRNA:   3'- gACCGUGGCA-GUGc-UGUu-GCC-CCUCU- -5'
18352 3' -56.9 NC_004681.1 + 43800 0.67 0.659676
Target:  5'- -cGGCGgUGUacuGCGGCGGCGGGGuGu -3'
miRNA:   3'- gaCCGUgGCAg--UGCUGUUGCCCCuCu -5'
18352 3' -56.9 NC_004681.1 + 2163 0.67 0.649111
Target:  5'- gUGGUgaugaucccAgCGUCGCGGCGcaguGCGcGGGAGAc -3'
miRNA:   3'- gACCG---------UgGCAGUGCUGU----UGC-CCCUCU- -5'
18352 3' -56.9 NC_004681.1 + 42209 0.67 0.649111
Target:  5'- uUGGCAUCGUCAaaguUGGCc-CGGGaGAGGu -3'
miRNA:   3'- gACCGUGGCAGU----GCUGuuGCCC-CUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.