miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18352 5' -53.2 NC_004681.1 + 29544 0.66 0.89405
Target:  5'- -aCCG-CCCGUGGUguAGCCGUugcccGAGg -3'
miRNA:   3'- caGGCaGGGUACCAguUUGGUAc----CUC- -5'
18352 5' -53.2 NC_004681.1 + 37557 0.66 0.89405
Target:  5'- uGUCCuugaaGUCCgG-GGUCGAGCUGUGGuGa -3'
miRNA:   3'- -CAGG-----CAGGgUaCCAGUUUGGUACCuC- -5'
18352 5' -53.2 NC_004681.1 + 27719 0.66 0.886844
Target:  5'- cUUCGUCCCc--GUCGAGCuCAUGGGc -3'
miRNA:   3'- cAGGCAGGGuacCAGUUUG-GUACCUc -5'
18352 5' -53.2 NC_004681.1 + 34014 0.66 0.871665
Target:  5'- -cCCGUCgUCGUGGUC-GACUgcGGAGa -3'
miRNA:   3'- caGGCAG-GGUACCAGuUUGGuaCCUC- -5'
18352 5' -53.2 NC_004681.1 + 55321 0.67 0.847074
Target:  5'- --gCGUCCCAgcgGGUCucgaauucggAGGCUGUGGGGu -3'
miRNA:   3'- cagGCAGGGUa--CCAG----------UUUGGUACCUC- -5'
18352 5' -53.2 NC_004681.1 + 13290 0.67 0.83842
Target:  5'- aGUCCGagggcgCCCu--GUCGAGCC-UGGAGa -3'
miRNA:   3'- -CAGGCa-----GGGuacCAGUUUGGuACCUC- -5'
18352 5' -53.2 NC_004681.1 + 58209 0.67 0.835782
Target:  5'- gGUUCGUCCUgagcGUGGagAGgccgggggacuaccGCCAUGGAGu -3'
miRNA:   3'- -CAGGCAGGG----UACCagUU--------------UGGUACCUC- -5'
18352 5' -53.2 NC_004681.1 + 30622 0.68 0.782328
Target:  5'- --gCGUCCCGgcUGGUaccGGCCGUGGAu -3'
miRNA:   3'- cagGCAGGGU--ACCAgu-UUGGUACCUc -5'
18352 5' -53.2 NC_004681.1 + 70697 0.69 0.741714
Target:  5'- -aUCGcUCCAUGGUUuGACCAUGGGa -3'
miRNA:   3'- caGGCaGGGUACCAGuUUGGUACCUc -5'
18352 5' -53.2 NC_004681.1 + 11585 0.69 0.720706
Target:  5'- -gUCGUCgCCGUaGUCAAGCCAgaagGGAGc -3'
miRNA:   3'- caGGCAG-GGUAcCAGUUUGGUa---CCUC- -5'
18352 5' -53.2 NC_004681.1 + 31063 0.69 0.720706
Target:  5'- uGUgCGUCCCGUcguucgaccGGaugCAGAUCGUGGAGu -3'
miRNA:   3'- -CAgGCAGGGUA---------CCa--GUUUGGUACCUC- -5'
18352 5' -53.2 NC_004681.1 + 70802 1.08 0.002694
Target:  5'- aGUCCGUCCCAUGGUCAAACCAUGGAGc -3'
miRNA:   3'- -CAGGCAGGGUACCAGUUUGGUACCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.