miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18353 3' -53 NC_004681.1 + 35165 0.66 0.890043
Target:  5'- -uCGUAGuguuCGgGAUUGCGG-CAGUCAu -3'
miRNA:   3'- guGCGUU----GCgCUAACGCCuGUCAGUu -5'
18353 3' -53 NC_004681.1 + 5283 0.66 0.882604
Target:  5'- gGC-CAugGCGGgcGCGGACAGg--- -3'
miRNA:   3'- gUGcGUugCGCUaaCGCCUGUCaguu -5'
18353 3' -53 NC_004681.1 + 49294 0.66 0.866952
Target:  5'- aCACcgaGGCGCGcaagGCGGGCGGUCu- -3'
miRNA:   3'- -GUGcg-UUGCGCuaa-CGCCUGUCAGuu -5'
18353 3' -53 NC_004681.1 + 33466 0.66 0.858752
Target:  5'- gGCGC-GCGCGAc-GCGGcCGGUCu- -3'
miRNA:   3'- gUGCGuUGCGCUaaCGCCuGUCAGuu -5'
18353 3' -53 NC_004681.1 + 75439 0.66 0.850312
Target:  5'- gGCGCAgcccACGUGccuaUGCGGACAGcccUCGAc -3'
miRNA:   3'- gUGCGU----UGCGCua--ACGCCUGUC---AGUU- -5'
18353 3' -53 NC_004681.1 + 47391 0.66 0.850312
Target:  5'- cCACgGCGACGCGGUccUGC-GACGucGUCAAg -3'
miRNA:   3'- -GUG-CGUUGCGCUA--ACGcCUGU--CAGUU- -5'
18353 3' -53 NC_004681.1 + 58483 0.67 0.84164
Target:  5'- gGCGCcGCGUGAaccGCGaGGCAGUCc- -3'
miRNA:   3'- gUGCGuUGCGCUaa-CGC-CUGUCAGuu -5'
18353 3' -53 NC_004681.1 + 33442 0.67 0.84164
Target:  5'- aGC-CAGCGUGAUgUGCGGGCGGg--- -3'
miRNA:   3'- gUGcGUUGCGCUA-ACGCCUGUCaguu -5'
18353 3' -53 NC_004681.1 + 3131 0.67 0.838995
Target:  5'- cUugGCGcCGCGggUGCGGGCauugccgcuggcguAGUCGu -3'
miRNA:   3'- -GugCGUuGCGCuaACGCCUG--------------UCAGUu -5'
18353 3' -53 NC_004681.1 + 49431 0.67 0.832746
Target:  5'- -cCGCGGCGCcgccgugGCGGACGGUgAGg -3'
miRNA:   3'- guGCGUUGCGcuaa---CGCCUGUCAgUU- -5'
18353 3' -53 NC_004681.1 + 23476 0.67 0.814326
Target:  5'- aCugGCgAACGUGGagGCGGGCAGg--- -3'
miRNA:   3'- -GugCG-UUGCGCUaaCGCCUGUCaguu -5'
18353 3' -53 NC_004681.1 + 29837 0.68 0.764053
Target:  5'- gGCGCGcuugccccuguugGCGCGAaUGCGGucaagcuCGGUCAc -3'
miRNA:   3'- gUGCGU-------------UGCGCUaACGCCu------GUCAGUu -5'
18353 3' -53 NC_004681.1 + 57434 0.7 0.679707
Target:  5'- cCGCGguACGCGAgcUUGCGG-CGGUa-- -3'
miRNA:   3'- -GUGCguUGCGCU--AACGCCuGUCAguu -5'
18353 3' -53 NC_004681.1 + 52842 0.7 0.657678
Target:  5'- cCAUGCAGCGCGugaagacCGGGCAGuUCAGg -3'
miRNA:   3'- -GUGCGUUGCGCuaac---GCCUGUC-AGUU- -5'
18353 3' -53 NC_004681.1 + 39938 0.7 0.635552
Target:  5'- gCGCGCGcggGCGCGGUgcgcGCGGuGCGGUCc- -3'
miRNA:   3'- -GUGCGU---UGCGCUAa---CGCC-UGUCAGuu -5'
18353 3' -53 NC_004681.1 + 60488 0.72 0.569407
Target:  5'- uGCGCAGCGgGAUUagugGCGGcaaugGCGGUCAc -3'
miRNA:   3'- gUGCGUUGCgCUAA----CGCC-----UGUCAGUu -5'
18353 3' -53 NC_004681.1 + 23158 0.73 0.515608
Target:  5'- -cUGC-GCGCGAUUGCGGGCGGg--- -3'
miRNA:   3'- guGCGuUGCGCUAACGCCUGUCaguu -5'
18353 3' -53 NC_004681.1 + 70984 1.05 0.003844
Target:  5'- uCACGCAACGCGAUUGCGGACAGUCAAc -3'
miRNA:   3'- -GUGCGUUGCGCUAACGCCUGUCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.