miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18353 5' -61.7 NC_004681.1 + 48314 0.66 0.461988
Target:  5'- cGGC-GAGGGCcaGCUUGUaGGCgCGCUu -3'
miRNA:   3'- -CCGaCUCCCGuaCGAGCG-CCG-GCGAc -5'
18353 5' -61.7 NC_004681.1 + 41661 0.67 0.416169
Target:  5'- uGCgGGGuGGCGcUGCaUgGCGGCCGCg- -3'
miRNA:   3'- cCGaCUC-CCGU-ACG-AgCGCCGGCGac -5'
18353 5' -61.7 NC_004681.1 + 5924 0.67 0.398634
Target:  5'- gGGCUGAGGcGCuu-CUCGUG-CCGCa- -3'
miRNA:   3'- -CCGACUCC-CGuacGAGCGCcGGCGac -5'
18353 5' -61.7 NC_004681.1 + 36286 0.67 0.373238
Target:  5'- aGGUUGAGcGGC-UGCgggCGCGGgaaaCGCUa -3'
miRNA:   3'- -CCGACUC-CCGuACGa--GCGCCg---GCGAc -5'
18353 5' -61.7 NC_004681.1 + 8470 0.67 0.373238
Target:  5'- cGGCUGAccccGGCAcgGCU-GCGGCUgaGCUGa -3'
miRNA:   3'- -CCGACUc---CCGUa-CGAgCGCCGG--CGAC- -5'
18353 5' -61.7 NC_004681.1 + 17930 0.68 0.36502
Target:  5'- gGGUUGGuGaGGCcgGUGCcuugCGCGGCCGCc- -3'
miRNA:   3'- -CCGACU-C-CCG--UACGa---GCGCCGGCGac -5'
18353 5' -61.7 NC_004681.1 + 44239 0.68 0.356928
Target:  5'- cGGCcggUGAGGGCcagGCcCGCGGCCu--- -3'
miRNA:   3'- -CCG---ACUCCCGua-CGaGCGCCGGcgac -5'
18353 5' -61.7 NC_004681.1 + 16288 0.68 0.356928
Target:  5'- gGGCUaccagcuccccGAGGGCAUcCcCGCGGCCGg-- -3'
miRNA:   3'- -CCGA-----------CUCCCGUAcGaGCGCCGGCgac -5'
18353 5' -61.7 NC_004681.1 + 16026 0.68 0.348963
Target:  5'- cGGCUGcuGGCAaGggCGCcGCCGCUGu -3'
miRNA:   3'- -CCGACucCCGUaCgaGCGcCGGCGAC- -5'
18353 5' -61.7 NC_004681.1 + 30140 0.68 0.325835
Target:  5'- cGGcCUGugggucGGGCucagGCggCGCGGCCGCg- -3'
miRNA:   3'- -CC-GACu-----CCCGua--CGa-GCGCCGGCGac -5'
18353 5' -61.7 NC_004681.1 + 56281 0.69 0.318383
Target:  5'- gGGCaUGAGGaGCGcGCUggacuUGUGGCCGCg- -3'
miRNA:   3'- -CCG-ACUCC-CGUaCGA-----GCGCCGGCGac -5'
18353 5' -61.7 NC_004681.1 + 75606 0.69 0.311059
Target:  5'- gGGUUGAGccucuGGCGUaugaGCUCGCGuCUGCUGa -3'
miRNA:   3'- -CCGACUC-----CCGUA----CGAGCGCcGGCGAC- -5'
18353 5' -61.7 NC_004681.1 + 50362 0.69 0.296798
Target:  5'- cGGCUGuGGGaCGUGgUCGagGGCgGCUa -3'
miRNA:   3'- -CCGACuCCC-GUACgAGCg-CCGgCGAc -5'
18353 5' -61.7 NC_004681.1 + 47409 0.69 0.296798
Target:  5'- aGGUUGuccGGGUcgAUGCUCG-GGCCGUUa -3'
miRNA:   3'- -CCGACu--CCCG--UACGAGCgCCGGCGAc -5'
18353 5' -61.7 NC_004681.1 + 50526 0.7 0.257077
Target:  5'- ---cGAGGGCAcgGagaUCGCGGuuGCUGa -3'
miRNA:   3'- ccgaCUCCCGUa-Cg--AGCGCCggCGAC- -5'
18353 5' -61.7 NC_004681.1 + 46184 0.7 0.257077
Target:  5'- uGUUGAGGaGCGcgGCuUCGCGGCCGaCUu -3'
miRNA:   3'- cCGACUCC-CGUa-CG-AGCGCCGGC-GAc -5'
18353 5' -61.7 NC_004681.1 + 9951 0.7 0.250895
Target:  5'- uGCgGuGGGCcgGUUCgucuucgccuuGCGGCCGCUGc -3'
miRNA:   3'- cCGaCuCCCGuaCGAG-----------CGCCGGCGAC- -5'
18353 5' -61.7 NC_004681.1 + 16122 0.71 0.221813
Target:  5'- cGGCUGugucGGGUAUcgGCuUCGCGG-CGCUGg -3'
miRNA:   3'- -CCGACu---CCCGUA--CG-AGCGCCgGCGAC- -5'
18353 5' -61.7 NC_004681.1 + 69887 0.73 0.163577
Target:  5'- aGCUaaccauGGGUacGUGCgCGCGGCCGCUGg -3'
miRNA:   3'- cCGAcu----CCCG--UACGaGCGCCGGCGAC- -5'
18353 5' -61.7 NC_004681.1 + 624 0.74 0.129323
Target:  5'- cGUUGAGGGa---CUCGCGGCCGCg- -3'
miRNA:   3'- cCGACUCCCguacGAGCGCCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.