Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18353 | 5' | -61.7 | NC_004681.1 | + | 48314 | 0.66 | 0.461988 |
Target: 5'- cGGC-GAGGGCcaGCUUGUaGGCgCGCUu -3' miRNA: 3'- -CCGaCUCCCGuaCGAGCG-CCG-GCGAc -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 41661 | 0.67 | 0.416169 |
Target: 5'- uGCgGGGuGGCGcUGCaUgGCGGCCGCg- -3' miRNA: 3'- cCGaCUC-CCGU-ACG-AgCGCCGGCGac -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 5924 | 0.67 | 0.398634 |
Target: 5'- gGGCUGAGGcGCuu-CUCGUG-CCGCa- -3' miRNA: 3'- -CCGACUCC-CGuacGAGCGCcGGCGac -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 36286 | 0.67 | 0.373238 |
Target: 5'- aGGUUGAGcGGC-UGCgggCGCGGgaaaCGCUa -3' miRNA: 3'- -CCGACUC-CCGuACGa--GCGCCg---GCGAc -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 8470 | 0.67 | 0.373238 |
Target: 5'- cGGCUGAccccGGCAcgGCU-GCGGCUgaGCUGa -3' miRNA: 3'- -CCGACUc---CCGUa-CGAgCGCCGG--CGAC- -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 17930 | 0.68 | 0.36502 |
Target: 5'- gGGUUGGuGaGGCcgGUGCcuugCGCGGCCGCc- -3' miRNA: 3'- -CCGACU-C-CCG--UACGa---GCGCCGGCGac -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 44239 | 0.68 | 0.356928 |
Target: 5'- cGGCcggUGAGGGCcagGCcCGCGGCCu--- -3' miRNA: 3'- -CCG---ACUCCCGua-CGaGCGCCGGcgac -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 16288 | 0.68 | 0.356928 |
Target: 5'- gGGCUaccagcuccccGAGGGCAUcCcCGCGGCCGg-- -3' miRNA: 3'- -CCGA-----------CUCCCGUAcGaGCGCCGGCgac -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 16026 | 0.68 | 0.348963 |
Target: 5'- cGGCUGcuGGCAaGggCGCcGCCGCUGu -3' miRNA: 3'- -CCGACucCCGUaCgaGCGcCGGCGAC- -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 30140 | 0.68 | 0.325835 |
Target: 5'- cGGcCUGugggucGGGCucagGCggCGCGGCCGCg- -3' miRNA: 3'- -CC-GACu-----CCCGua--CGa-GCGCCGGCGac -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 56281 | 0.69 | 0.318383 |
Target: 5'- gGGCaUGAGGaGCGcGCUggacuUGUGGCCGCg- -3' miRNA: 3'- -CCG-ACUCC-CGUaCGA-----GCGCCGGCGac -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 75606 | 0.69 | 0.311059 |
Target: 5'- gGGUUGAGccucuGGCGUaugaGCUCGCGuCUGCUGa -3' miRNA: 3'- -CCGACUC-----CCGUA----CGAGCGCcGGCGAC- -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 50362 | 0.69 | 0.296798 |
Target: 5'- cGGCUGuGGGaCGUGgUCGagGGCgGCUa -3' miRNA: 3'- -CCGACuCCC-GUACgAGCg-CCGgCGAc -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 47409 | 0.69 | 0.296798 |
Target: 5'- aGGUUGuccGGGUcgAUGCUCG-GGCCGUUa -3' miRNA: 3'- -CCGACu--CCCG--UACGAGCgCCGGCGAc -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 50526 | 0.7 | 0.257077 |
Target: 5'- ---cGAGGGCAcgGagaUCGCGGuuGCUGa -3' miRNA: 3'- ccgaCUCCCGUa-Cg--AGCGCCggCGAC- -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 46184 | 0.7 | 0.257077 |
Target: 5'- uGUUGAGGaGCGcgGCuUCGCGGCCGaCUu -3' miRNA: 3'- cCGACUCC-CGUa-CG-AGCGCCGGC-GAc -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 9951 | 0.7 | 0.250895 |
Target: 5'- uGCgGuGGGCcgGUUCgucuucgccuuGCGGCCGCUGc -3' miRNA: 3'- cCGaCuCCCGuaCGAG-----------CGCCGGCGAC- -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 16122 | 0.71 | 0.221813 |
Target: 5'- cGGCUGugucGGGUAUcgGCuUCGCGG-CGCUGg -3' miRNA: 3'- -CCGACu---CCCGUA--CG-AGCGCCgGCGAC- -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 69887 | 0.73 | 0.163577 |
Target: 5'- aGCUaaccauGGGUacGUGCgCGCGGCCGCUGg -3' miRNA: 3'- cCGAcu----CCCG--UACGaGCGCCGGCGAC- -5' |
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18353 | 5' | -61.7 | NC_004681.1 | + | 624 | 0.74 | 0.129323 |
Target: 5'- cGUUGAGGGa---CUCGCGGCCGCg- -3' miRNA: 3'- cCGACUCCCguacGAGCGCCGGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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