miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18354 3' -51.6 NC_004681.1 + 47784 0.66 0.92832
Target:  5'- aUUCAcCCGCGagGCGCccaAGUACGCa- -3'
miRNA:   3'- aAAGUaGGUGUagUGCG---UCAUGCGga -5'
18354 3' -51.6 NC_004681.1 + 16058 0.66 0.92832
Target:  5'- --gCAUCCGCcgCaACGCAGacUGCCg -3'
miRNA:   3'- aaaGUAGGUGuaG-UGCGUCauGCGGa -5'
18354 3' -51.6 NC_004681.1 + 19241 0.66 0.922405
Target:  5'- -----cCCACGUC-CGCAGcaaGCGCCa -3'
miRNA:   3'- aaaguaGGUGUAGuGCGUCa--UGCGGa -5'
18354 3' -51.6 NC_004681.1 + 39014 0.66 0.922405
Target:  5'- --aCGUCgACGgccugCugGUGGUGCGCCc -3'
miRNA:   3'- aaaGUAGgUGUa----GugCGUCAUGCGGa -5'
18354 3' -51.6 NC_004681.1 + 75004 0.66 0.916201
Target:  5'- -gUCGUCUGCuuugGUCACGguGUA-GCCa -3'
miRNA:   3'- aaAGUAGGUG----UAGUGCguCAUgCGGa -5'
18354 3' -51.6 NC_004681.1 + 58613 0.66 0.916201
Target:  5'- -cUCggCCACcaguuuGUCGCGCA--GCGCCUg -3'
miRNA:   3'- aaAGuaGGUG------UAGUGCGUcaUGCGGA- -5'
18354 3' -51.6 NC_004681.1 + 42456 0.66 0.916201
Target:  5'- cUUCAUcuaCCACGUCgGCGCGauuGUcACGCCUc -3'
miRNA:   3'- aAAGUA---GGUGUAG-UGCGU---CA-UGCGGA- -5'
18354 3' -51.6 NC_004681.1 + 33372 0.66 0.909712
Target:  5'- --cCggCCGCGUCGCGC---GCGCCg -3'
miRNA:   3'- aaaGuaGGUGUAGUGCGucaUGCGGa -5'
18354 3' -51.6 NC_004681.1 + 19911 0.66 0.902937
Target:  5'- -gUCA-CCGCGcagCACGCGGUACuggcgGCCg -3'
miRNA:   3'- aaAGUaGGUGUa--GUGCGUCAUG-----CGGa -5'
18354 3' -51.6 NC_004681.1 + 54898 0.67 0.895882
Target:  5'- gUUCAUCCAC-UCgACGguGUcuGCGCg- -3'
miRNA:   3'- aAAGUAGGUGuAG-UGCguCA--UGCGga -5'
18354 3' -51.6 NC_004681.1 + 75540 0.67 0.895882
Target:  5'- ---uGUCCGCAUaggCACGUGGgcUGCGCCg -3'
miRNA:   3'- aaagUAGGUGUA---GUGCGUC--AUGCGGa -5'
18354 3' -51.6 NC_004681.1 + 24835 0.67 0.888548
Target:  5'- -cUCAUCgGCGUCggcgGCGCGGgcgGCgGCCg -3'
miRNA:   3'- aaAGUAGgUGUAG----UGCGUCa--UG-CGGa -5'
18354 3' -51.6 NC_004681.1 + 28417 0.67 0.880943
Target:  5'- gUUCGUCUGCGUCACGauggGCGUCc -3'
miRNA:   3'- aAAGUAGGUGUAGUGCgucaUGCGGa -5'
18354 3' -51.6 NC_004681.1 + 49774 0.67 0.864939
Target:  5'- -----gCCGCAgagCGCGCAGUA-GCCUg -3'
miRNA:   3'- aaaguaGGUGUa--GUGCGUCAUgCGGA- -5'
18354 3' -51.6 NC_004681.1 + 10019 0.68 0.856554
Target:  5'- -aUCAUCCGCAUCuuCGgGGaagGCGUCg -3'
miRNA:   3'- aaAGUAGGUGUAGu-GCgUCa--UGCGGa -5'
18354 3' -51.6 NC_004681.1 + 52359 0.68 0.856554
Target:  5'- --aCGUCCGCGUCGCGgccCAGagaguCGCCa -3'
miRNA:   3'- aaaGUAGGUGUAGUGC---GUCau---GCGGa -5'
18354 3' -51.6 NC_004681.1 + 26294 0.68 0.839058
Target:  5'- -cUCAUCCgACGUgGcCGCAcUGCGCCg -3'
miRNA:   3'- aaAGUAGG-UGUAgU-GCGUcAUGCGGa -5'
18354 3' -51.6 NC_004681.1 + 35461 0.68 0.839058
Target:  5'- -cUCAUaagCCACGUgCGCGguGUguACGCCg -3'
miRNA:   3'- aaAGUA---GGUGUA-GUGCguCA--UGCGGa -5'
18354 3' -51.6 NC_004681.1 + 21928 0.68 0.839058
Target:  5'- aUUCGUCCAaggugUAUGCGGagGCGCCg -3'
miRNA:   3'- aAAGUAGGUgua--GUGCGUCa-UGCGGa -5'
18354 3' -51.6 NC_004681.1 + 2169 0.69 0.801428
Target:  5'- -aUgAUCCcaGCGUCgcgGCGCAGUGCGCg- -3'
miRNA:   3'- aaAgUAGG--UGUAG---UGCGUCAUGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.