miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18354 5' -52.7 NC_004681.1 + 14559 0.66 0.900542
Target:  5'- gGAGGCggcgCGCGcGGCGUuCGccuccgccucGCGGGCg -3'
miRNA:   3'- -CUUCGa---GCGUuCCGCAuGU----------UGCCUGa -5'
18354 5' -52.7 NC_004681.1 + 70990 0.66 0.900542
Target:  5'- cGAAGCUcaCGCAAcGCG-AUuGCGGACa -3'
miRNA:   3'- -CUUCGA--GCGUUcCGCaUGuUGCCUGa -5'
18354 5' -52.7 NC_004681.1 + 39173 0.66 0.900542
Target:  5'- aGGGCUUGCAcGGCGcggu-CGGACa -3'
miRNA:   3'- cUUCGAGCGUuCCGCauguuGCCUGa -5'
18354 5' -52.7 NC_004681.1 + 27131 0.66 0.900542
Target:  5'- cGGGCUCguccuGCAA-GCGUucuCGGCGGGCUa -3'
miRNA:   3'- cUUCGAG-----CGUUcCGCAu--GUUGCCUGA- -5'
18354 5' -52.7 NC_004681.1 + 28434 0.66 0.886217
Target:  5'- uGGAGCUCGCGugGGGCacucccguuGUaacGCAAgGGAUUa -3'
miRNA:   3'- -CUUCGAGCGU--UCCG---------CA---UGUUgCCUGA- -5'
18354 5' -52.7 NC_004681.1 + 16995 0.66 0.877117
Target:  5'- cGAGGCcCGCAAGGaccaGUACGAgaaguucaccaaGGACUc -3'
miRNA:   3'- -CUUCGaGCGUUCCg---CAUGUUg-----------CCUGA- -5'
18354 5' -52.7 NC_004681.1 + 74034 0.67 0.862782
Target:  5'- --uGCUCGCGcGGaugcucCGUGgAGCGGACg -3'
miRNA:   3'- cuuCGAGCGUuCC------GCAUgUUGCCUGa -5'
18354 5' -52.7 NC_004681.1 + 28633 0.67 0.837171
Target:  5'- -uAGCUCGCuaguAGGCGgaACuauCGGACc -3'
miRNA:   3'- cuUCGAGCGu---UCCGCa-UGuu-GCCUGa -5'
18354 5' -52.7 NC_004681.1 + 66960 0.67 0.837171
Target:  5'- cGAGCUCG-AAGGCG-ACAucGgGGACa -3'
miRNA:   3'- cUUCGAGCgUUCCGCaUGU--UgCCUGa -5'
18354 5' -52.7 NC_004681.1 + 64288 0.67 0.828187
Target:  5'- cGAAGUUgGCGuGGCacuuGUAguGCGGACUa -3'
miRNA:   3'- -CUUCGAgCGUuCCG----CAUguUGCCUGA- -5'
18354 5' -52.7 NC_004681.1 + 75106 0.67 0.828187
Target:  5'- uGAGuCUCuGUAGGGC-UACGugGGACa -3'
miRNA:   3'- cUUC-GAG-CGUUCCGcAUGUugCCUGa -5'
18354 5' -52.7 NC_004681.1 + 39891 0.68 0.818996
Target:  5'- cGAGGCgUGgGAGGCGauggucgcGCGGCGGGCg -3'
miRNA:   3'- -CUUCGaGCgUUCCGCa-------UGUUGCCUGa -5'
18354 5' -52.7 NC_004681.1 + 45040 0.68 0.818996
Target:  5'- cGAGCUCGCGGuGGCGgcuccaccGCGugGGGg- -3'
miRNA:   3'- cUUCGAGCGUU-CCGCa-------UGUugCCUga -5'
18354 5' -52.7 NC_004681.1 + 49058 0.68 0.790276
Target:  5'- aGggGCUCGCAAagcucaGCGaa-GACGGGCa -3'
miRNA:   3'- -CuuCGAGCGUUc-----CGCaugUUGCCUGa -5'
18354 5' -52.7 NC_004681.1 + 4181 0.68 0.790276
Target:  5'- gGAAGCgacccagCGCGGGGUugGCGugGGGCc -3'
miRNA:   3'- -CUUCGa------GCGUUCCGcaUGUugCCUGa -5'
18354 5' -52.7 NC_004681.1 + 18197 0.68 0.780356
Target:  5'- uGGAGCgccucccggCGCAcccccGGGUGUACcgGGCGGGCa -3'
miRNA:   3'- -CUUCGa--------GCGU-----UCCGCAUG--UUGCCUGa -5'
18354 5' -52.7 NC_004681.1 + 54138 0.69 0.770281
Target:  5'- aGGGCUCuc-GGGCGcGCGGCGGACc -3'
miRNA:   3'- cUUCGAGcguUCCGCaUGUUGCCUGa -5'
18354 5' -52.7 NC_004681.1 + 60011 0.7 0.696387
Target:  5'- -cAGUUCGUAGGGCGggucggugACGAUGGAg- -3'
miRNA:   3'- cuUCGAGCGUUCCGCa-------UGUUGCCUga -5'
18354 5' -52.7 NC_004681.1 + 13390 0.7 0.663547
Target:  5'- cAGGCUCGaCAGGGCGcccu-CGGACUc -3'
miRNA:   3'- cUUCGAGC-GUUCCGCauguuGCCUGA- -5'
18354 5' -52.7 NC_004681.1 + 64887 0.71 0.641487
Target:  5'- -cAGCUCGUggGGCGagACGAcCGGAa- -3'
miRNA:   3'- cuUCGAGCGuuCCGCa-UGUU-GCCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.